Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7191 288 8e-73 seq3663 95.1 1e-14 >seq7191 Length=127218 Score = 288 bits (318), Expect = 8e-73 Identities = 441/626 (70%), Gaps = 2/626 (0%) Strand=Plus/Minus Query 20039 ATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTAT 20098 |||||||||| | | | || ||||| ||||| ||||| || ||| | || ||| | Sbjct 41828 ATGAATTTCCTCTGCTTATAACCAAACGTGTATTCTGGAAGGGAGTTTTGGAGGAGCTGC 41769 Query 20099 TATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTT 20158 | |||||||| || ||||| |||||| ||| || || || ||||| || || | Sbjct 41768 TGTGGTTTATCAAGGGATCCACAAATGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATCT 41709 Query 20159 GGAGCGCACATGGATC-TAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 || || ||||||| | || | ||||| ||||| |||||| | ||| ||||| Sbjct 41708 GGGATGCCAATGGATCCTGAG-ACTTTTTGGACAGCCTGGGATTTTCCGCCCGACAAGAA 41650 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || || |||| || || ||||| || || ||||| ||||||||||| || || || Sbjct 41649 GGAGACCTGGGCCCAGTCTATGGCTTCCAGTGGAGGCATTTTGGAGCAGACTACAAAGAT 41590 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||||| || |||| | || ||||||||||| || | ||||| || ||| | || Sbjct 41589 ATGAATTCAGATTACTCAGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATC 41530 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| ||||| | ||||||||||| || | || ||||||||| | |||||| | ||| Sbjct 41529 AAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCCT 41470 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 || ||||| ||||||| || ||| || ||||| || || || | || | ||| || Sbjct 41469 TTGATGGCGCTGCCTCCCTGCCATGCTCTCTGCCAGTTCTATGTGGTGAACAGAGAACTG 41410 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || | || || || || | || ||||| |||||||| || ||||| ||||| Sbjct 41409 TCCTGCCAGCTATACCAGCGGTCAGGAGACATGGGTCTGGGTGTACCCTTCAACATTGCC 41350 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || ||||| ||||| || || ||||||||||| | |||| | | | |||||||| Sbjct 41349 AGCTATGCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGCAGCCAGGTGACTTT 41290 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637 || || || | ||||| || ||||||||||| ||||| || || || | ||| ||| Sbjct 41289 GTACATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGCCACTGAAAACCCAG 41230 Query 20638 TTAACACGACAACCAAAACAATTCCC 20663 | ||| |||||| || ||||| Sbjct 41229 CTTCAGCGAGAACCAAGACCTTTCCC 41204 >seq3663 Length=525456 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||||| ||||| ||||||| || ||| || ||||| || || || | || Sbjct 215539 AGATCTTCCTTTGATGGCGCTGCCTCCCTGCCATGCTCTCTGCCAGTTCTATGTGGTGAA 215598 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 ||| |||| || || | || || || || | || ||||| |||||||| || || Sbjct 215599 CGGGGAACTGTCCTGCCAGCTATACCAGCGGTCAGGAGACATGGGTCTGGGTGTACCCTT 215658 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| ||||| || ||||| ||||| || || ||||||||||| Sbjct 215659 CAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACA 215700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399081070031365