Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq15872 271 7e-68 seq15962 260 1e-64 seq3369 219 4e-52 seq1134 91.5 1e-13 seq9485 87.8 2e-12 seq3106 84.2 2e-11 seq2418 84.2 2e-11 >seq15872 Length=96178 Score = 271 bits (300), Expect = 7e-68 Identities = 501/727 (69%), Gaps = 7/727 (1%) Strand=Plus/Plus Query 13908 CCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATA 13967 |||| | ||||| || | ||||| || |||||||||||||| || |||||||| || | Sbjct 39929 CCATCTGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAA 39988 Query 13968 TATTTTCCATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCT 14026 | || ||||| || ||||||||||| | | | ||| ||| | | |||| || || Sbjct 39989 TGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAGCCTTGCTAA-AACCCAGCTCC 40047 Query 14027 AATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCT 14086 | | | || || || | |||||||| || || ||||||| |||||||| || Sbjct 40048 AGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCA 40107 Query 14087 ATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTT 14146 || || || || || | | || | || || | ||| || ||||| | | | Sbjct 40108 ATAAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAACAGCATTGATA 40167 Query 14147 ATAATAATCGTAATAATTTCAT-TAGAA-GGAGGATATTTTAGATGTTTAAAAATTAAAC 14204 || || | | || | || | || || || | || ||||| || || | | Sbjct 40168 AT--TACTTCTTTTACTCTCTGCTCCAACGGTTTATGTAGCAGGTGTTTGAACATCAGGC 40225 Query 14205 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 14264 | ||||| ||||| || | ||||||| | || |||||||| || || ||||| || | | Sbjct 40226 AGGCAAAGTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAAAACGTGAGCC 40285 Query 14265 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 14324 ||||||||| ||||||||| || | ||| ||||||| || || || || |||||||| | Sbjct 40286 CTGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGA 40345 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 || | || || || ||||| ||| | | | ||||||| | | || | ||||| | | Sbjct 40346 TTTCTTCCACAGCGGCAAAGGCTGT-AGCCTTTCTCCATAGGTGGCCTCTTTGTCCCCAA 40404 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14444 |||| ||||| || | || || || | | || |||||||| ||| ||||| | Sbjct 40405 TCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAAATGGCATTGA 40464 Query 14445 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14504 | ||| |||| | ||||| | | | |||||| || |||||||| | || ||||||| Sbjct 40465 AGAAAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTT 40524 Query 14505 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14564 |||| |||| ||||||||| || || || || ||||| ||||| ||||||| || Sbjct 40525 CAGAATGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCTTCTGTAATTT 40584 Query 14565 GTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14624 | || ||| | ||||| || ||||||||||||| ||||| |||||||| ||||||| Sbjct 40585 GCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTGGCTGCAA 40644 Query 14625 AAAATGC 14631 | || || Sbjct 40645 AGAAAGC 40651 >seq15962 Length=33107 Score = 260 bits (288), Expect = 1e-64 Identities = 501/736 (68%), Gaps = 11/736 (1%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| ||||| || | ||||| || |||||||||||||| || ||| Sbjct 15245 GACATCACTCCCATCCGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 15304 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 ||||| || || || ||||| || ||||||||||| | | || || || | || Sbjct 15305 TCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAA 15364 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || || || | | | || || || | |||||||| || || ||||||| ||| Sbjct 15365 CCCAGCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAA 15424 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || || || || || | | | | | || | ||| || ||| Sbjct 15425 TTCATGCCAATAAGCTTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTAACA 15484 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 14195 || | | | || || || | || | || | | || || | || ||||| | Sbjct 15485 GCATTGATAATTATT-TCTTT-TACTCTCTGCTCCCACGGTTTATGTAACAGGTGTTTGA 15542 Query 14196 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 14255 | || | || | ||| ||||| || | ||||||||| || |||||||| || || |||| Sbjct 15543 ACATCAGGCAGGAAAAGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGAAA 15602 Query 14256 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGG 14315 | || | |||||||| | ||||||||| || | ||| ||||||| || || || || | Sbjct 15603 ACGTGAGCCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 15662 Query 14316 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14375 ||||||| ||||| || | || ||||| || | ||||||| | | || | || Sbjct 15663 AAAAGAAGATTCCTTCCAAGGCGGCAAAGGC-------CTTTCTCCATAGGTGGCCTCTT 15715 Query 14376 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14435 ||| | ||||| ||||| || | || || || | | || |||||||| || Sbjct 15716 TGTCCCCAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAAA 15775 Query 14436 TAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14495 | ||||| || | | |||| | ||||| | | | |||||| || |||||||| | | Sbjct 15776 TGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGAC 15835 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 | ||||||||||| |||||||||||||| || || || || ||||| ||||| | |||| Sbjct 15836 TGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTT 15895 Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 ||| ||| || ||| | ||||| || ||||||||||||| ||||| ||||||| Sbjct 15896 CTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCAC 15955 Query 14616 TAGCTGCAAAAAATGC 14631 |||||||||| || || Sbjct 15956 TAGCTGCAAAGAAAGC 15971 >seq3369 Length=196643 Score = 219 bits (242), Expect = 4e-52 Identities = 317/446 (71%), Gaps = 1/446 (0%) Strand=Plus/Minus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || ||| | || || | || ||||| ||||| || | ||||||||||| ||||||| Sbjct 91936 AGGTGTCTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGATAATAAGC 91877 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || || ||||| || | |||||||||| || |||||| || | ||| ||||||| || Sbjct 91876 TCATTGGAAAACGTAAGCCCTGGCATCAGTCTTCGTTTCTTGAGCCAGAATATTGACGCA 91817 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || ||||||||||| | ||| || | || ||||| |||| | ||||||||| | Sbjct 91816 AAAGAACCGGAAAAGAAGAGTCCTTCCAGGGCGGCAAAGGCTACAACACGTTCTCCATAG 91757 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 | || ||| | | ||||| ||||| || | || || || | | || | Sbjct 91756 GTGGCCCTTTGCCCCCA-ATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGC 91698 Query 14426 ATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 14485 ||||| ||||| ||||| || | | |||| | ||||| | | | |||||| || ||| Sbjct 91697 ATTGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCA 91638 Query 14486 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA 14545 ||||| | || ||||||||||| |||||||||||||| || || || || ||| | ||| Sbjct 91637 ATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAA 91578 Query 14546 CATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14605 || | |||||| ||| || ||| | ||||| || || |||||||||| ||| Sbjct 91577 CAGCGGACTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCCAATTTTCATTCACT 91518 Query 14606 ATACCATCACTAGCTGCAAAAAATGC 14631 | |||||||| |||||||| || || Sbjct 91517 AGGCCATCACTGGCTGCAAAGAAAGC 91492 >seq1134 Length=343165 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 11637 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11696 ||| |||| || ||| ||||||| |||| |||||| | |||| |||| | Sbjct 35215 GTATCATCCAACAATTAAACTTCT---ATTTCTGGATAAAAAATCCGTTCACAAATGAGC 35271 Query 11697 TGCGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATA 11756 || || | |||||| || |||| | | |||| | | ||| ||| ||||| | |||| Sbjct 35272 TGAGCAATTCGATCACCCTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGTATA 35331 Query 11757 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 || ||||| || || ||||||||||||||||| || || ||||| |||||||| Sbjct 35332 ACACCAATATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTGTATCTATG 35385 >seq9485 Length=81507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 11637 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTT-TTCAAAAATAAT 11695 ||| |||| || || |||||||| |||| |||||| | | |||| |||| | Sbjct 942 GTATCATCCAACACTTGAACTTCTTCTATTTCTGGATAAAAAAATCCGTTCACAAATGAG 883 Query 11696 TTGCGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATAT 11755 ||| || | | |||| || |||| | |||||| | | ||| ||| ||||| | ||| Sbjct 882 TTGAGCAATTGGATCACCCTTTTTTACTTTAAATTTCTCTTTGCCAAAATTAAACAGTAT 823 Query 11756 AACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 ||| |||| || | ||||||||||||||||| || || |||||| ||||||| Sbjct 822 AACACCAACATTTCTTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 768 >seq3106 Length=183861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 11637 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11696 ||| |||| || || |||||||| |||| |||||| | |||| |||| | Sbjct 112267 GTATCATCCAACACTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGC 112208 Query 11697 TGCGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATA 11756 || || | |||||| || |||| | | |||| | | ||| ||| ||| | | |||| Sbjct 112207 TGAGCAATTCGATCACCCTTTTTTACTTCAAATTTCTCTTTGCCAAAATTGAACAGTATA 112148 Query 11757 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 || |||| || || ||||||||||||||||| || || |||||| ||||||| Sbjct 112147 ACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 112094 >seq2418 Length=977819 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | || ||||||||||| |||||||||||||| || || || Sbjct 181286 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTG 181345 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 181346 GAAGCCATAGAAACAGCGGGCTTCTG 181371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482218037676760