Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1696 93.3 3e-14 seq3495 89.7 4e-13 seq304 89.7 4e-13 seq3540 84.2 2e-11 seq1925 84.2 2e-11 >seq1696 Length=1012329 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||||||||||||||| | | || | |||||||| ||| Sbjct 926865 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCTGATAAAGTACGTCCATCTTCCAGTTGC 926924 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| |||||||| |||||| || | ||||||||||| || | Sbjct 926925 TTACCAGCAAAGATCAGTCTTTGCTGATCCGGAGGAATTCCTTCCTTATCCTGGATCTTG 926984 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | | | ||| || |||||| |||| ||| || | || || || Sbjct 926985 GCCTTGACATTTTCTATAGTATCCGAGGGCTCAACCTCAAGCGTGGTGGTCTTCCCAGTA 927044 Query 18303 AATGTTTTTACAAAAATTTGCATTTT 18328 | || ||||| ||||| |||||||| Sbjct 927045 AGGGTGTTTACGAAAATCTGCATTTT 927070 >seq3495 Length=1667739 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||| | | || | |||| Sbjct 878801 AGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 878860 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 878861 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 878920 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | ||||||| |||||| ||| | ||||||| | Sbjct 878921 TGGATCT-TGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 878979 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 878980 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879012 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||| | | || | |||| Sbjct 879256 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 879315 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 879316 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 879375 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | ||||||| |||||| ||| | ||||||| | Sbjct 879376 TGGATCT-TGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 879434 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 879435 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 879029 AGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 879088 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 879089 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 879148 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | ||||||| |||||| ||| | ||||||| | Sbjct 879149 TGGATCT-TGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 879207 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 879208 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879240 >seq304 Length=872862 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 181504 AGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 181445 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 181444 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 181385 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | ||||||| |||||| ||| | ||||||| | Sbjct 181384 TGGATCT-TGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 181326 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || || || || |||||||| Sbjct 181325 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 181290 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||| | | || | |||| Sbjct 181732 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 181673 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 181672 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 181613 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | ||||||| |||||| ||| | ||||||| | Sbjct 181612 TGGATCT-TGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 181554 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 181553 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181521 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||| | | || | |||| Sbjct 182187 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 182128 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 182127 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 182068 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | ||||||| |||||| ||| | ||||||| | Sbjct 182067 TGGATCT-TGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 182009 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 182008 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 181960 AGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 181901 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||| ||||| Sbjct 181900 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 181841 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | ||||||| |||||| ||| | ||||||| | Sbjct 181840 TGGATCT-TGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 181782 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 181781 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181749 >seq3540 Length=97209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| | || || || || || ||||||||||| | || || | |||| Sbjct 54523 AGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 54464 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || | || ||| | ||||||||| || Sbjct 54463 TCCAGCTGCTTGCCAGCA-AGATCAGCCTCTGCTGGT-CAGGGGGATGCCTTCCTTGTCC 54406 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||||||||| | | | ||||||| |||||| || | ||||||| | Sbjct 54405 TGGATCT-TTGCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 54347 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || || || || ||||| Sbjct 54346 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54315 >seq1925 Length=520723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | |||| || || || |||||| Sbjct 381528 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGAGGAAGGGTGGACTCCTTTTGA 381469 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| || || ||| |||| |||||| Sbjct 381468 ATGTTGTAGTCTGACAAAGTGCGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTT 381409 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||| || || | ||||||||||| || | |||||| | | | | || Sbjct 381408 TGCTGA-ACAGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGCA 381350 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || |||| |||||| | || || || | ||||| |||||||| || Sbjct 381349 TCTGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGT 381290 Query 18324 ATTTT 18328 ||||| Sbjct 381289 ATTTT 381285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379246185793965