Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq15962 120 6e-22 seq2418 89.7 1e-12 >seq15962 Length=33107 Score = 120 bits (132), Expect = 6e-22 Identities = 297/446 (67%), Gaps = 21/446 (5%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| || | ||||||||||||||| |||| | || ||||| || |||||| || Sbjct 15693 GCCTTTGCCGCCTTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTC 15634 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | || | |||| || ||||| | ||||||||| | ||| ||||| || Sbjct 15633 AAGAAACGAGGACTAATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGATGAG 15574 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTT-GATACCCC--- 102096 || | || | |||||| | ||| || |||| ||| | |||| ||| || Sbjct 15573 GGCTTACACTGTGACTTTTCCTGCCTGATGTTCAAACA----CCTGTTACATAAACCGTG 15518 Query 102097 --ATCA-AGAG--AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 | || |||| |||| | | |||| ||| | || || | |||||||| || Sbjct 15517 GGAGCAGAGAGTAAAAGAAAT-----AATTATCA---ATGCTGTTAGGATTGAACAGGAG 15466 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 | ||| | | || |||| || || | | || ||||| |||| || |||| ||| Sbjct 15465 TCCCTCCCGGAGGCCTTGCCCGTGAAGCTTATTGGCATGAATTGCACTTTAATGAAGCAG 15406 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 |||||||| ||||||||||| | || || | || |||| | ||| | | Sbjct 15405 TACATTGAGTTTGTGGCAGACAGGCTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCAGA 15346 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || || || || |||||||| || ||||| || || ||||| ||||| ||| Sbjct 15345 GTAGAGAATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTT 15286 Query 102332 GAAAAGAGAGTCGCCGAGTATCAACG 102357 || |||||||| | ||||||||| || Sbjct 15285 GAGAAGAGAGTAGGCGAGTATCAGCG 15260 >seq2418 Length=977819 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| || || ||||||||||||||| |||| | || ||||| || |||| Sbjct 180952 TTGTAGCCTTTGCCGCCGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 180893 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | |||| || ||||| | ||||||||| | ||| |||| Sbjct 180892 GGCTCAAGAAACGAGGACTGATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGG 180833 Query 102036 ACGA 102039 | || Sbjct 180832 ATGA 180829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989315749444935