Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq15872 269 2e-67 seq15962 257 2e-63 seq2418 111 1e-19 seq2406 105 6e-18 seq606 93.3 4e-14 >seq15872 Length=96178 Score = 269 bits (298), Expect = 2e-67 Identities = 520/758 (69%), Gaps = 12/758 (2%) Strand=Plus/Plus Query 11334 CCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGAT 11392 |||||| ||||| || | |||| || | || || || |||||||| ||||| || || Sbjct 39929 CCATCTGCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAA 39987 Query 11393 ATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCT 11452 || | |||||| ||| ||| ||||| | ||| |||| | || | |||| | ||| Sbjct 39988 ATGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAGCCTTGCTAAAACCCAGCTCC 40047 Query 11453 GTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCT 11512 | | || ||||| || || || || ||||| ||||||| |||||||| || Sbjct 40048 AGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCA 40107 Query 11513 ATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATG 11572 ||||| | ||| || | || | || | ||||||| ||| || |||| |||| || Sbjct 40108 ATAAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAACAGCATTGATA 40167 Query 11573 ATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACA 11631 |||| | | || || | || | ||| ||||| | ||||| ||||| | || Sbjct 40168 ATTA-CTTCTTTTACTCTCTGCTCCAACGGTTTATGTAGCAGGTGTTTGAACATCAGGCA 40226 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||| ||||| ||||| || || | || || || || ||||| ||||| || | || Sbjct 40227 GGCAAAGTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCC 40286 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||||| ||||||||| || | ||| ||||| | ||||| |||||||||||||| || Sbjct 40287 TGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGAT 40346 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATAT 11808 | | |||||||| ||||| ||| || ||||||||||| ||| ||| || Sbjct 40347 TTCTTCCACAGCGGCAAAGGCT-GTAGCCTTTCTCCATAGGTGGCCTCTTTGTCCCCAAT 40405 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 ||| |||||| || || ||||| || || || |||||||| || || || || Sbjct 40406 CCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAAATGGCATTGAA 40465 Query 11869 TAAATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 ||| ||| ||||| | |||| | | || || || || | | ||| |||||| Sbjct 40466 GAAA--AATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATT 40523 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||| | |||||||| || ||||| |||||||||||||| | || |||| | Sbjct 40524 TCAGAATGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCTTCTGTAATT 40583 Query 11987 TGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 || || || ||||| ||| | ||||| ||||| || || |||||||| | |||| Sbjct 40584 TGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTGGCTGCA 40643 Query 12047 AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 || || || || | ||| ||| |||||| | || || Sbjct 40644 AAGAAAGCAAGAACATGAGATATGAAGTATCTCTCCTC 40681 >seq15962 Length=33107 Score = 257 bits (284), Expect = 2e-63 Identities = 517/762 (68%), Gaps = 16/762 (2%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| ||||| || | |||| || | || || || |||||||| ||||| | Sbjct 15250 CACTCCCATCCGCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTTCCA 15308 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 | || || | |||||| ||| ||| ||||| | ||| |||| || || | |||| | Sbjct 15309 GAGAAATGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCA 15368 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | || ||||| || || || || ||||| ||||||| ||||||| Sbjct 15369 GCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCA 15428 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || ||||| | ||| || | || | | | |||||| ||| || |||| |||| Sbjct 15429 TGCCAATAAGCTTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTAACAGCAT 15488 Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627 || ||||| ||| | || | ||| |||||| | ||||| ||||| | Sbjct 15489 TGATAATTATTTCTTTTACTCTCTGCTCCCACGGTTTATGTAACAGGTGTTTGAACATCA 15548 Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 || | ||| ||||| ||||| || || || || || || || ||||| ||||| || | Sbjct 15549 GGCAGGAAAAGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGAAAACGTGA 15608 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747 || ||||| | ||||||||| || | ||| ||||| | ||||| ||||||||||||| Sbjct 15609 GCCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGA 15668 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAG 11804 | ||||| |||| || ||||| || ||||||||||| ||| ||| Sbjct 15669 AGATTCCTTCCAAGGCGGCAAAGGC-------CTTTCTCCATAGGTGGCCTCTTTGTCCC 15721 Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 ||||| |||||| || || ||||| || || || |||||||| || || | Sbjct 15722 CAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAAATGGCAT 15781 Query 11865 T--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 | | | |||| | ||||| | |||| | | || || || || | | ||| || Sbjct 15782 TGAAGAGAAATTC--CCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTA 15839 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 |||||| ||||| || |||||||| || ||||| || ||||||||||| || || |||| Sbjct 15840 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 15899 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 | || || || ||||| ||| | ||||| ||||| || || |||||||||| Sbjct 15900 AATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTAGC 15959 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || || | ||| ||| |||||| | || || Sbjct 15960 TGCAAAGAAAGCGAGAACATGAGATATGAAGTATCTCTCCTC 16001 >seq2418 Length=977819 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || || ||||| ||||| || | || ||||||| ||||||||| || Sbjct 180829 TCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATCAGTCCTCGTTTCTTG 180888 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 180889 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCGGCAAAGGCT 180948 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 180949 ACAACACGTTCTCC 180962 >seq2406 Length=770489 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || || ||||| ||||| || | ||| ||||| | |||| || | Sbjct 395250 CTTCATCTCTGCTGATGAGCTCATTGGAAAAGGTGAGTCCAGGCATGAGACCTCTCTTCT 395191 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| | Sbjct 395190 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 395131 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 395130 CCACCACTCTTTCCCC 395115 Score = 96.9 bits (106), Expect = 3e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | ||| |||||||||| ||||||||||||||||| |||| ||| || || Sbjct 389336 ATCTCTGATATAAGTATCTATTAGCAAACTATACATTTCTGAGTGAACATTCTCGATGAG 389277 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 389276 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 389231 >seq606 Length=273764 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || || || ||||| ||||||||| Sbjct 19210 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATACGGTTCAATG 19151 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | | || |||| || || ||||| |||||||| || || || | Sbjct 19150 GATTCATTATTCCCAAGGATCTGAGCAGTTGAGGCAGTGGGCATTGGGGCAATAAGTAAA 19091 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 19090 CTGTTTCTTATACCAT 19075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || || |||||||| || ||||| | || |||| | | | |||| || Sbjct 2363 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 2304 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || ||||||||||| || || |||||||| || |||||||| | | || | || Sbjct 2303 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 2244 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | || || || ||||| || || ||||| | ||| || Sbjct 2243 TCTGTGAGATTTCCCACACAGTCTTATAAAGTTGCTT 2207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468400892760080