Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq7191 224 8e-54 seq3663 118 9e-22 >seq7191 Length=127218 Score = 224 bits (248), Expect = 8e-54 Identities = 412/600 (69%), Gaps = 4/600 (1%) Strand=Plus/Plus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || |||| ||| || ||||| || || || ||||| || || |||||||| || Sbjct 41239 CAGTGGCTCAATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCACC 41298 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || |||||| |||| ||| || |||| || || || || || |||||||| ||||| Sbjct 41299 TGGCTGCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTT 41358 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || || || || || |||||||| | |||| |||||| |||||||||||||| || | Sbjct 41359 GAAGGGTACACCCAGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCT 41418 Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 |||| || ||||| || | | | || || ||||| || |||||| | || || Sbjct 41419 GTTCACCACATAGAACTGGCAGAGAGCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATC 41478 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATC 21223 |||||||| || ||||| | ||| | | || | || | || || || Sbjct 41479 TTTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTC 41538 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 | ||| | |||||||||| || || ||||| ||| | | | | |||| Sbjct 41539 AATCACTTTTTGCAGCTGGTCTACTCCTTGACCTGAGTAATCTGAATTCATATCTTTGTA 41598 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCG 21343 || || |||||||| ||||||||||| || || || || ||||| || || || | || Sbjct 41599 GTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCG 41658 Query 21344 GTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTA 21402 | | || ||| | || | |||||||| | | ||| || | || ||||| ||||| | Sbjct 41659 GGCGGAAAATCCCAG-GCTGTCCAAAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCA 41717 Query 21403 CGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCT 21462 | || | |||||||| | | | ||||| ||| ||||||||||||||| ||||| Sbjct 41718 CTCCCTTGGAAGACAGTTCCTTAGCATTTGTGGATCCCTTGATAAACCACAGCAGCTCCT 41777 Query 21463 CCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGT 21522 ||| || ||| |||| || || | |||||| | | ||||||||| || | ||||||| Sbjct 41778 CCAAAACTCCCTTCCAGAATACACGTTTGGTTATAAGCAGAGGAAATTCAT--CTGAGGT 41835 >seq3663 Length=525456 Score = 118 bits (130), Expect = 9e-22 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 ||||||||||| ||| || |||| || || || || || |||||||| ||||| || || Sbjct 215713 CAGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGG 215654 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || || |||||||| | |||| |||||| |||||||||||||| ||||| | Sbjct 215653 TACACCCAGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCCCCGTTCAC 215594 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||| || ||||| || | | | || || ||||| || |||||| Sbjct 215593 CACATAGAACTGGCAGAGAGCATGGCAGGGAGGCAGCGCCATC 215551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427665697557360