Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq15962 138 8e-28 seq15872 129 4e-25 seq3369 118 8e-22 seq2418 93.3 3e-14 >seq15962 Length=33107 Score = 138 bits (152), Expect = 8e-28 Identities = 306/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 22749 GGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCT 22808 ||||||||| || | ||||| || | |||||||| || ||||| | ||||||||||| Sbjct 15694 GGCCTTTGCCGCCTTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCT 15635 Query 22809 GAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||||||| | |||||||||| ||| | |||||| | || || Sbjct 15634 CAAGAAACGAGGACTAATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGATGA 15575 Query 22869 AGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCA 22928 || |||||||||||||| | || || |||| | || || | | |||||||| | Sbjct 15574 GGGCTTACACTGTGACTTTTCCTGCCTGATGTTCAAACACCTGTTACATAAACCGTGGGA 15515 Query 22929 GGACGATGCACATCAAATCA-TATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAG 22987 | | | | | |||| | |||| |||| ||| ||||| || | | ||| | Sbjct 15514 GCAGAGAGTAAAAGAAATAATTATC-AATGCTGTTAGGATTGAACAGGAGTCCCTCCCGG 15456 Query 22988 AGGCACT-AAAGACACCCCTACTTGGTATGAATAGTGACAGT-ATGAGACTGTACATACA 23045 |||| | | | | || |||| |||||| | || | |||| | |||||| | Sbjct 15455 AGGCCTTGCCCGTGAAGCTTA-TTGGCATGAATTG-CACTTTAATGAAGCAGTACATTGA 15398 Query 23046 GTTTGTTGCAGATCGCC---TGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGC 23102 |||||| ||||| | | |||| || ||||||| | ||| | | | || | Sbjct 15397 GTTTGTGGCAGACAGGCTTATGCTGGA---GCTGGGTTTTAGCAAGGTTTTCAGAGTAGA 15341 Query 23103 CAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGAACG 23162 ||||||||||| |||||||| |||||| | ||||| || || ||||||||||| Sbjct 15340 GAATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGAA 15281 Query 23163 CCGTGTGAGTGAATATCAGCGAATGGGTGT 23192 | || | || |||||||| ||||| || Sbjct 15280 GAGAGTAGGCGAGTATCAGCGGATGGGAGT 15251 >seq15872 Length=96178 Score = 129 bits (142), Expect = 4e-25 Identities = 286/417 (69%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| ||||| |||| || | |||||||| || ||||| | ||||||||||| Sbjct 40367 GCCTTTGCCGCTGTGGAAGAAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTC 40308 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||||| || ||||||||| | |||||||||| ||| | |||||| | | || Sbjct 40307 AAGAAACGAGGACTGATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGGTGAG 40248 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 || |||||||||||||||| || || |||| | || || | | ||||||| || Sbjct 40247 GGCTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGCTACATAAACCGTTGGAG 40188 Query 22930 GACGATGCACATCAAATCA-TATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAGA 22988 | | | | || | | |||| |||| ||| ||||| || ||| || || Sbjct 40187 CAGAGAGTAAAAGAAGTAATTATC-AATGCTGTTAGGATTGAACAGGAGTTCCTCACGGA 40129 Query 22989 GGCACT-AAAGACACCCCTACTTGGTATGAATAGTGACAGT-ATGAGACTGTACATACAG 23046 ||| | || | | || |||| |||||| | || | |||| | |||||| || Sbjct 40128 GGCCTTGCCAGTGAAGCTTA-TTGGCATGAATTG-CACTTTAATGAAGCAGTACATTGAG 40071 Query 23047 TTTGTTGCAGATCGCC---TGCTCGATGCCCTGGGTTAT-GCAAAGATGTATAACGTTGC 23102 ||||| ||||| | | |||| || ||||||| | |||| | | | | || | Sbjct 40070 TTTGTGGCAGACAGGCTTATGCTGGA---GCTGGGTTTTAGCAAGGCT-TTCAGAGTAGA 40015 Query 23103 CAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 ||||||||||| |||||||| |||||| | ||||| || || ||||||||||| Sbjct 40014 GAATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGA 39958 >seq3369 Length=196643 Score = 118 bits (130), Expect = 8e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || | ||||| || | ||||| || || |||||| | ||||||||||| Sbjct 91776 GCCTTTGCCGCCCTGGAAGGACTCTTCTTTTCCGGTTCTTTTGCGTCAATATTCTGGCTC 91835 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||||| || ||||||||| | |||||||||| ||| | |||| | | || || Sbjct 91836 AAGAAACGAAGACTGATGCCAGGGCTTACGTTTTCCAATGAGCTTATTATCAGAGATGAG 91895 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCA 22907 ||| |||||||||||||||| || || |||| || || Sbjct 91896 GGTTTACACTGTGACTTTGCCTGCCTGATGTTCAGACA 91933 >seq2418 Length=977819 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || || ||||| || | |||||||| || ||||| | ||||||||||| Sbjct 180947 GCCTTTGCCGCCGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTC 180888 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||||||| | |||||||||| ||| | |||||| | || || Sbjct 180887 AAGAAACGAGGACTGATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGATGA 180829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356141744832271