Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3540 107 2e-18 seq3495 91.5 1e-13 seq1696 91.5 1e-13 seq304 91.5 1e-13 >seq3540 Length=97209 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || | Sbjct 53857 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 53798 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| ||||||| | ||||| || || || Sbjct 53797 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 53738 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| || | | || | |||||| ||||||||||| Sbjct 53737 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 53678 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 53677 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 53631 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || | Sbjct 54313 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 54254 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| ||||||| | ||||| || || || Sbjct 54253 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 54194 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| || | | || | |||||| ||||||||||| Sbjct 54193 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 54134 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 54133 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54087 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || | Sbjct 54766 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 54707 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| ||||||| | ||||| || || || Sbjct 54706 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 54647 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| || | | || | ||||| ||||||||||| Sbjct 54646 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 54587 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 54586 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54540 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || | Sbjct 55218 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 55159 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| ||||||| | ||||| || || || Sbjct 55158 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 55099 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| || | | || | |||||| ||||||||||| Sbjct 55098 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 55039 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 55038 TCCA-GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54993 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || | Sbjct 54538 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 54479 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| ||||||| | ||||| || || || Sbjct 54478 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA-AGATCAGCCTCTGCTGGTCAGGGGG- 54421 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| | || | | || | ||||| ||||||||||| Sbjct 54420 ATGCCTTCCTTGTCCTGGATCTTT-GCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 54362 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 54361 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54315 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAA-ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 || |||| | |||||| || | ||| | || ||||| || || ||||| || || Sbjct 54991 CCACCTCTGAGACGCAAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGA 54932 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| || |||||| ||||||| | ||||| || || || Sbjct 54931 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 54872 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| ||| || | | || | |||||| |||||||||| Sbjct 54871 GATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGA-TGTGTCACTGGGCTCCAC 54813 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCA 139763 ||| | ||| | ||| |||| |||| || || ||||| || |||| Sbjct 54812 CTCCAGGGTGATGGTC-TGCCAGTCAGGGTCTTCACGAAGATCTGCA 54767 >seq3495 Length=1667739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| | | ||| | || | ||| | || |||||||| || ||||| || || Sbjct 879013 GCCGCCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 879072 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| ||||| || || ||| |||| || | ||||| || || || Sbjct 879073 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 879132 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| || ||| | | || | ||||| |||||||||| Sbjct 879133 AATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCAC 879192 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 879193 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879240 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| || || || ||||||||||| Sbjct 878858 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTA 878917 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | || | ||||| |||||||||| || | ||| | Sbjct 878918 TCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 878977 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 878978 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879012 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| || || || ||||||||||| Sbjct 879313 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTA 879372 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | || | ||||| |||||||||| || | ||| | Sbjct 879373 TCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 879432 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 879433 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879467 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| || || || ||||||||||| Sbjct 879541 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTA 879600 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | || | ||||| |||||||||| || | ||| | Sbjct 879601 TCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 879660 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 879661 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879695 >seq1696 Length=1012329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || | || | || | ||||| || || Sbjct 926865 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCTGATAAAGTACGTCCA-TCTTCCAGTTG 926923 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 926924 CTTACCAGCAAAGATCAGTCTTTGCTGATCCGGAGGAATTCCTTCCTTATCCTGGATCTT 926983 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | ||| | || || | |||||| ||||||| || ||||| || || Sbjct 926984 GGCCTTGACATTTTCTATAGTATCCGAGGGCTCAACCTCAAGCGTGGTGGTCTTCCCAGT 927043 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || |||||||| || ||||| Sbjct 927044 AAGGGTGTTTACGAAAATCTGCAT 927067 >seq304 Length=872862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| | | ||| | || | ||| | || |||||||| || ||||| || || Sbjct 181520 GCCGCCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 181461 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| ||||| || || ||| |||| || | ||||| || || || Sbjct 181460 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 181401 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| || ||| | | || | ||||| |||||||||| Sbjct 181400 AATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCAC 181341 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 181340 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181293 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || | |||| ||||| ||||| || || Sbjct 181945 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 181886 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || ||||||||||| || ||| || ||| Sbjct 181885 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGGATCTTGGCTTTC 181826 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||||||||| || | ||| | ||||||||||||| || Sbjct 181825 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 181766 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 181765 TTCACGAAGATCTGCAT 181749 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| | | ||| | || | ||| | || || ||||| || ||||| || || Sbjct 181748 GCCGCCCCTCAGACGGAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 181689 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| ||||| || || ||| |||| || | ||||| || || || Sbjct 181688 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 181629 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| || ||| | | || | ||||| |||||||||| Sbjct 181628 AATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCAC 181569 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 181568 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181521 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| || || || ||||||||||| Sbjct 182130 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTA 182071 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | || | ||||| |||||||||| || | ||| | Sbjct 182070 TCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 182011 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 182010 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495932809674400