Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15872 289 3e-73 seq15962 273 2e-68 seq3369 221 1e-52 seq1134 91.5 1e-13 seq9485 87.8 2e-12 seq3106 84.2 2e-11 >seq15872 Length=96178 Score = 289 bits (320), Expect = 3e-73 Identities = 581/849 (68%), Gaps = 17/849 (2%) Strand=Plus/Plus Query 13576 CCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATA 13635 |||| | ||||| || | ||||| || |||||||||||||| || |||||||| || | Sbjct 39929 CCATCTGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAA 39988 Query 13636 TATTTTCCATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACAACCTAGTTCT 13694 | || ||||| || ||||||||||| | | | ||| ||| | | |||| || || Sbjct 39989 TGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAGCCTTGCTAA-AACCCAGCTCC 40047 Query 13695 AATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13754 | | | || || || | ||||||||| || || ||||||| |||||||| || Sbjct 40048 AGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCA 40107 Query 13755 ATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTT 13814 || || || || || | | || | || || | ||| || ||||| | | Sbjct 40108 ATAAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAACAGCAT---TG 40164 Query 13815 ATAATAA-TTGTAATAATCTCAT-TAGAA-GGAGGATATTTTAGATGTTTAAAAATTAAA 13871 ||||| | || | || |||| | || || || | || ||||| || || | Sbjct 40165 ATAATTACTTCTTTTACTCTCTGCTCCAACGGTTTATGTAGCAGGTGTTTGAACATCAGG 40224 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| || | ||||||| | || |||||||| || || ||||| || | Sbjct 40225 CAGGCAAAGTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAAAACGTGAGC 40284 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 |||||||||| ||||||||| || | ||| ||||||| ||||| || || |||||||| Sbjct 40285 CCTGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAG 40344 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 ||| | || || || ||||| ||| | | | ||||||| | | || | ||||| | Sbjct 40345 ATTTCTTCCACAGCGGCAAAGGCTGT-AGCCTTTCTCCATAGGTGGCCTCTTTGTCCCCA 40403 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| ||||| || | || || || | | || |||||||| ||| ||||| Sbjct 40404 ATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAAATGGCATTG 40463 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || ||| ||||| | ||||| | | | |||||| || |||||||| | || |||||| Sbjct 40464 AAGAAAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATT 40523 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||||| |||| ||||||||| || || || || ||||| || || ||||| | | Sbjct 40524 TCAGAATGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCTTCTGTAATT 40583 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || ||||| | ||||| || ||||||||||||| ||||| |||||||| |||||| Sbjct 40584 TGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTGGCTGCA 40643 Query 14292 AAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14349 || || || || ||| | || |||||| ||| || || || | ||| | Sbjct 40644 AAGAAAGCAAGAACATGAGAT--ATGAAGTATCTCTCCTCCGGCTTCAGCAGCTCCCAGT 40701 Query 14350 --CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 |||| ||||| |||||||| || || ||| ||||||| || ||| | || || Sbjct 40702 GCTGGAT--GTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCGGCCTT 40759 Query 14408 TTTATACAT 14416 ||||| || Sbjct 40760 CTTATATAT 40768 >seq15962 Length=33107 Score = 273 bits (302), Expect = 2e-68 Identities = 504/737 (68%), Gaps = 13/737 (2%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| ||||| || | ||||| || |||||||||||||| || ||| Sbjct 15245 GACATCACTCCCATCCGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 15304 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 ||||| || || || ||||| || ||||||||||| | | || || || | || Sbjct 15305 TCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAA 15364 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || || || | | | || || || | ||||||||| || || ||||||| ||| Sbjct 15365 CCCAGCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAA 15424 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || || || | | | | | || | ||| || ||| Sbjct 15425 TTCATGCCAATAAGCTTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTAACA 15484 Query 13806 GCCTCTTTTATAATAATTG-TAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTA 13862 || | | ||||| ||| | || |||| | | || || | || ||||| Sbjct 15485 GCAT---TGATAATTATTTCTTTTACTCTCTGCTCCCACGGTTTATGTAACAGGTGTTTG 15541 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || | || | ||| ||||| || | ||||||||| || |||||||| || || ||| Sbjct 15542 AACATCAGGCAGGAAAAGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGAA 15601 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 || || | |||||||| | ||||||||| || | ||| ||||||| ||||| || || Sbjct 15602 AACGTGAGCCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCA 15661 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 |||||||| ||||| || | || ||||| || | ||||||| | | || | | Sbjct 15662 GAAAAGAAGATTCCTTCCAAGGCGGCAAAGGC-------CTTTCTCCATAGGTGGCCTCT 15714 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 |||| | ||||| ||||| || | || || || | | || |||||||| | Sbjct 15715 TTGTCCCCAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAA 15774 Query 14103 ATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14162 || ||||| || | | ||||| | ||||| | | | |||||| || |||||||| | Sbjct 15775 ATGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGA 15834 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 || ||||||||||| |||||||||||||| || || || || ||||| || || | ||| Sbjct 15835 CTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCT 15894 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 || | ||| ||||| | ||||| || ||||||||||||| ||||| |||||| Sbjct 15895 TCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCA 15954 Query 14283 CTAGCTGCAAAAAATGC 14299 ||||||||||| || || Sbjct 15955 CTAGCTGCAAAGAAAGC 15971 >seq3369 Length=196643 Score = 221 bits (244), Expect = 1e-52 Identities = 483/718 (67%), Gaps = 9/718 (1%) Strand=Plus/Minus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||| | |||| ||||| || |||||||||||| || |||||||| || || || ||| Sbjct 92202 TGACACTCACCTACTCTCTT---AAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTCTCC 92146 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 || || ||||||||||| | | || || || | |||| || || | | | Sbjct 92145 ATGAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAAGC 92086 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 || || || | ||||||||| || || ||||||| || ||||| | || | || Sbjct 92085 CTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAGTTCATGTCAATAAACTTC 92026 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA-T 13822 || || | | || | | || | ||| || ||||| | | ||||| | | Sbjct 92025 ACTGGCAAGGCCTCCGTGAGGAGCTCCTGTTCCATCCTAACAGCAT---TGATAATTACT 91969 Query 13823 TGTAATAATCTCAT-TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13881 | | || |||| | | | || || ||| | || || | || ||||| | Sbjct 91968 TCTTTTACTCTCTGCTCCGACGTTTATGGAGCAGGTGTCTGAACATCAGGCAGGCAAAGT 91909 Query 13882 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13941 |||| || | ||||||||||| ||||||| || || ||||| || | |||||||||| Sbjct 91908 CACAGTGTAAACCCTCATCTCTGATAATAAGCTCATTGGAAAACGTAAGCCCTGGCATCA 91849 Query 13942 ATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAA 14001 || |||||| || | ||| ||||||| ||||| || ||||||||||| | ||| || | Sbjct 91848 GTCTTCGTTTCTTGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGAGTCCTTCCA 91789 Query 14002 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14061 || ||||| |||| | ||||||||| | | || ||| | | ||||| Sbjct 91788 GGGCGGCAAAGGCTACAACACGTTCTCCATAGGTGGCCCTTTGCCCCCA-ATCCAACGCA 91730 Query 14062 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT 14121 ||||| || | || || || | | || |||||| ||||| ||||| || | | ||| Sbjct 91729 AGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCATTGAAGAGAAATT 91670 Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 || | ||||| | | | |||||| || |||||||| | || ||||||||||| |||| Sbjct 91669 CCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTA 91610 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241 |||||||||| || || || || ||| | || || | |||| | ||| ||||| Sbjct 91609 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGACTTCTGTAATTTGCACTTCTT 91550 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | ||||| || || |||||||||| |||| |||||||| |||||||| || || Sbjct 91549 GGCTAAATCGCTCCACCCAATTTTCATTCACTAGGCCATCACTGGCTGCAAAGAAAGC 91492 >seq1134 Length=343165 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 11304 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11363 ||| |||| || ||| ||||||| |||| |||||| | |||| |||| | Sbjct 35215 GTATCATCCAACAATTAAACTTCT---ATTTCTGGATAAAAAATCCGTTCACAAATGAGC 35271 Query 11364 TGAGCCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATA 11423 ||||| | ||||| || |||| | | |||| | | ||| ||| ||||| | |||| Sbjct 35272 TGAGCAATTCGATCACCCTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGTATA 35331 Query 11424 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11477 || ||||| || || ||||||||||||||||| || || ||||| |||||||| Sbjct 35332 ACACCAATATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTGTATCTATG 35385 >seq9485 Length=81507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 11304 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTT-TTCAAAAATAAT 11362 ||| |||| || || |||||||| |||| |||||| | | |||| |||| | Sbjct 942 GTATCATCCAACACTTGAACTTCTTCTATTTCTGGATAAAAAAATCCGTTCACAAATGAG 883 Query 11363 TTGAGCCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATAT 11422 |||||| | |||| || |||| | |||||| | | ||| ||| ||||| | ||| Sbjct 882 TTGAGCAATTGGATCACCCTTTTTTACTTTAAATTTCTCTTTGCCAAAATTAAACAGTAT 823 Query 11423 AACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11477 ||| |||| || | ||||||||||||||||| || || |||||| ||||||| Sbjct 822 AACACCAACATTTCTTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 768 >seq3106 Length=183861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 11304 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11363 ||| |||| || || |||||||| |||| |||||| | |||| |||| | Sbjct 112267 GTATCATCCAACACTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGC 112208 Query 11364 TGAGCCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATA 11423 ||||| | ||||| || |||| | | |||| | | ||| ||| ||| | | |||| Sbjct 112207 TGAGCAATTCGATCACCCTTTTTTACTTCAAATTTCTCTTTGCCAAAATTGAACAGTATA 112148 Query 11424 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11477 || |||| || || ||||||||||||||||| || || |||||| ||||||| Sbjct 112147 ACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 112094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479601129933800