Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15872 257 2e-63 seq15962 237 2e-57 seq3369 197 1e-45 seq1134 87.8 2e-12 seq9485 82.4 7e-11 >seq15872 Length=96178 Score = 257 bits (284), Expect = 2e-63 Identities = 575/850 (68%), Gaps = 19/850 (2%) Strand=Plus/Plus Query 13364 CCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATA 13423 |||| | ||||| || | ||||| || ||||| |||||||| || |||||||| || | Sbjct 39929 CCATCTGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAA 39988 Query 13424 TATTTTCCATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACAACCTAGTTCT 13482 | || ||||| || || |||||||| | | | ||| ||| | | |||| || || Sbjct 39989 TGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAGCCTTGCTAA-AACCCAGCTCC 40047 Query 13483 AATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13542 | | | || || || | ||||||||| || || ||||||| |||||||| || Sbjct 40048 AGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCA 40107 Query 13543 ATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTT 13602 || || || || || | | || | || || | ||| || ||||| | | Sbjct 40108 ATAAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAACAGCATTG--- 40164 Query 13603 ATAATAA--TCTTAATAATGTCAT-TAGAA-GGAGGATATTTTAGATGTTTAAAAATTAA 13658 ||||| | |||| || | || | || || || | || ||||| || || | Sbjct 40165 ATAATTACTTCTTT-TACTCTCTGCTCCAACGGTTTATGTAGCAGGTGTTTGAACATCAG 40223 Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 || ||||| ||||| || | ||||||| | || |||||||| || || ||||| || | Sbjct 40224 GCAGGCAAAGTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAAAACGTGAG 40283 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 |||||||||| ||||||||| || | ||| ||||||| || || || || |||||||| Sbjct 40284 CCCTGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAA 40343 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 ||| | || || || ||||| ||| | || | ||||||| | | || | ||||| Sbjct 40344 GATTTCTTCCACAGCGGCAAAGGCTGT-AGCCTTTCTCCATAGGTGGCCTCTTTGTCCCC 40402 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| ||||| || | || || || | | || |||||||| || ||||| Sbjct 40403 AATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAAATGGCATT 40462 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 ||| ||| |||| | ||||| | | | |||||| || |||||||| | || ||||| Sbjct 40463 GAAGAAAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACAT 40522 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 |||||| |||| |||||| || || || || || ||||| ||||| ||||||| Sbjct 40523 TTCAGAATGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCTTCTGTAAT 40582 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 ||| || || | ||||| || |||| |||||||| || || |||||||| ||||| Sbjct 40583 TTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTGGCTGC 40642 Query 14079 AAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 ||| || || || ||| | || |||||| ||| || || || | ||| Sbjct 40643 AAAGAAAGCAAGAACATGAGAT--ATGAAGTATCTCTCCTCCGGCTTCAGCAGCTCCCAG 40700 Query 14137 TCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 | ||| | ||||| |||||||| || || ||| ||||||| || ||| | || | Sbjct 40701 T--GCTGGATGTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCGGCCT 40758 Query 14195 TTTTATACAT 14204 | ||||| || Sbjct 40759 TCTTATATAT 40768 >seq15962 Length=33107 Score = 237 bits (262), Expect = 2e-57 Identities = 496/736 (67%), Gaps = 11/736 (1%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 15245 GACATCACTCCCATCCGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 15304 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 ||||| || || || ||||| || || |||||||| | | || || || | || Sbjct 15305 TCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAA 15364 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | | | || || || | ||||||||| || || ||||||| ||| Sbjct 15365 CCCAGCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAA 15424 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || || || | | | | | || | ||| || ||| Sbjct 15425 TTCATGCCAATAAGCTTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTAACA 15484 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 13651 || | | | || || |||| || | || | | || || | || ||||| | Sbjct 15485 GCATTGATAATTATT-TCTTT-TACTCTCTGCTCCCACGGTTTATGTAACAGGTGTTTGA 15542 Query 13652 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13711 | || | || | ||| ||||| || | ||||||||| || |||||||| || || |||| Sbjct 15543 ACATCAGGCAGGAAAAGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGAAA 15602 Query 13712 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGG 13771 | || | |||||||| | ||||||||| || | ||| ||||||| || || || || | Sbjct 15603 ACGTGAGCCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 15662 Query 13772 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTT 13831 ||||||| ||||| || | || ||||| || | ||||||| | | || | || Sbjct 15663 AAAAGAAGATTCCTTCCAAGGCGGCAAAGGC-------CTTTCTCCATAGGTGGCCTCTT 15715 Query 13832 TGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGA 13891 ||| ||||| ||||| || | || || || | | || |||||||| | Sbjct 15716 TGTCCCCAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAAA 15775 Query 13892 TTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 13951 | |||||||| | | |||| | ||||| | | | |||||| || |||||||| | | Sbjct 15776 TGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGAC 15835 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 | ||||||||||| ||||||||||| || || || || || ||||| ||||| | |||| Sbjct 15836 TGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTT 15895 Query 14012 CTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 ||| ||| || || | ||||| || |||| |||||||| || || ||||||| Sbjct 15896 CTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCAC 15955 Query 14072 TAGCTGCAAAAAATGC 14087 |||||||||| || || Sbjct 15956 TAGCTGCAAAGAAAGC 15971 >seq3369 Length=196643 Score = 197 bits (218), Expect = 1e-45 Identities = 312/446 (70%), Gaps = 1/446 (0%) Strand=Plus/Minus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || ||| | || || | || ||||| ||||| || | ||||||||||| ||||||| Sbjct 91936 AGGTGTCTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGATAATAAGC 91877 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || ||||| || | |||||||||| || |||||| || | ||| ||||||| || Sbjct 91876 TCATTGGAAAACGTAAGCCCTGGCATCAGTCTTCGTTTCTTGAGCCAGAATATTGACGCA 91817 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || ||||||||||| | ||| || | || ||||| |||| | ||||||||| | Sbjct 91816 AAAGAACCGGAAAAGAAGAGTCCTTCCAGGGCGGCAAAGGCTACAACACGTTCTCCATA- 91758 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | || |||| ||||| ||||| || | || || || | | || | Sbjct 91757 GGTGGCCCTTTGCCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGC 91698 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 ||||| || || |||||||| | | |||| | ||||| | | | |||||| || ||| Sbjct 91697 ATTGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCA 91638 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||||| | || ||||||||||| ||||||||||| || || || || || ||| | ||| Sbjct 91637 ATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAA 91578 Query 14002 CATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACA 14061 || | |||||| ||| || || | ||||| || || | |||||||| || Sbjct 91577 CAGCGGACTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCCAATTTTCATTCACT 91518 Query 14062 ATACCATCACTAGCTGCAAAAAATGC 14087 | |||||||| |||||||| || || Sbjct 91517 AGGCCATCACTGGCTGCAAAGAAAGC 91492 >seq1134 Length=343165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 11118 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11177 ||| |||| || ||| ||||||| |||| |||||| | |||| |||| | Sbjct 35215 GTATCATCCAACAATTAAACTTCT---ATTTCTGGATAAAAAATCCGTTCACAAATGAGC 35271 Query 11178 TGTGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATATA 11237 || || | |||||| || |||| | | |||| | | ||| | | ||||| | |||| Sbjct 35272 TGAGCAATTCGATCACCCTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGTATA 35331 Query 11238 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11291 || ||||| || || ||||||||||||||||| || || ||||| |||||||| Sbjct 35332 ACACCAATATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTGTATCTATG 35385 >seq9485 Length=81507 Score = 82.4 bits (90), Expect = 7e-11 Identities = 124/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 11118 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTT-TTCAAAAATAAT 11176 ||| |||| || || |||||||| |||| |||||| | | |||| |||| | Sbjct 942 GTATCATCCAACACTTGAACTTCTTCTATTTCTGGATAAAAAAATCCGTTCACAAATGAG 883 Query 11177 TTGTGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATAT 11236 ||| || | | |||| || |||| | |||||| | | ||| | | ||||| | ||| Sbjct 882 TTGAGCAATTGGATCACCCTTTTTTACTTTAAATTTCTCTTTGCCAAAATTAAACAGTAT 823 Query 11237 AACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11291 ||| |||| || | ||||||||||||||||| || || |||||| ||||||| Sbjct 822 AACACCAACATTTCTTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478462231209480