Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq15872 176 7e-39 seq15962 165 1e-35 seq3369 161 1e-34 seq7191 140 5e-28 >seq15872 Length=96178 Score = 176 bits (194), Expect = 7e-39 Identities = 556/854 (65%), Gaps = 37/854 (4%) Strand=Plus/Minus Query 125028 ATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC 125087 || || || ||||| |||| ||||| ||||| | || ||||| ||||| ||||||||| Sbjct 40768 ATATATAAGAAGGCCGAGGCTTCCTTCTGGACAGCTGAGGAGGTGGATCTTTCCAAGGAC 40709 Query 125088 CTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTATATCGCACAT 125143 | | | |||||| || ||||| | | ||||| || ||||| || | Sbjct 40708 ATCCAGCACTGGGAGC------TG-CTGAAGCCGGAGGAGAGATACTTCATATCTCATGT 40656 Query 125144 TTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTC 125203 | | || |||||||| | | ||||| || || || || ||| || || ||||| Sbjct 40655 TCTTGCTTTCTTTGCAGCCAGTGATGGCATAGTGAATGAAAATTTGGTGGAGCGATTTAG 40596 Query 125204 TCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAA 125263 ||||| || ||| |||| | || || || ||||| ||||| || || || Sbjct 40595 CCAAGAAGTGCAAATTACAGAAGCCCACTGTTTCTATGGATTACAAATTGCCATGGAAAA 40536 Query 125264 CGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAA 125323 ||| || || ||||||||| | || ||||||| |||||| ||||| ||| | || Sbjct 40535 CGTACATTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGATCC-CAAAGAAA 40477 Query 125324 ACACATGCT-CTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGG 125382 || | ||| || || || | || || | | | | || ||||| | |||| Sbjct 40476 GGGAATTTTTCTTCAATGCCATTTAAACAATGTCTTGTGTGAAGAAGAAGGCAGACTGGG 40417 Query 125383 TGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCG 125442 | || ||||| | ||| | || | | || | || || || | | || |||| Sbjct 40416 CCTTGCGTTGGATTGGGGACAAAGAGGCCACCTATGGAGAAAGGCTACAGCCTTT-GCCG 40358 Query 125443 CCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCG 125502 | || || | ||||||||||| ||| |||||| | || || ||||||||||| || | Sbjct 40357 CTGTGGAAGAAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAAACGAG 40298 Query 125503 GACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACT 125562 |||| ||||| || || ||| || ||| |||| | | |||||| |||||| Sbjct 40297 GACTGATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGGTGAGGGCTTACACT 40238 Query 125563 GTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTC-----CCGAGTGCAGATCCAG 125617 ||||||||||| || |||| ||| | |||| | ||| || || ||| Sbjct 40237 GTGACTTTGCCTGCCTGATGTT---CAAACACCTGCTACATAAACCGT-TGGAG---CAG 40185 Query 125618 CGATGAAAAG--GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 || ||||| || || | || |||| || ||||| ||||| ||||| || Sbjct 40184 AGAGTAAAAGAAGTAATTATCA---------ATGCTGTTAGGATTGAACAGGAGTTCCTC 40134 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATA 125735 || || || | || || | | ||||||||||| |||| ||||| ||||||| Sbjct 40133 ACGGAGGCCTTGCCAGTGAAGCTTATTGGCATGAATTGCACTTTAATGAAGCAGTACATT 40074 Query 125736 GAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAG 125795 |||||||||||||| | || || ||| || | ||||| || || | || Sbjct 40073 GAGTTTGTGGCAGACAGGCTTATGCTGGAGCTGGGTTTTAGCAAGGCTTTCAGAGTAGAG 40014 Query 125796 AATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||||| ||||| |||||| | ||| || || || || ||||| ||||| || |||||| Sbjct 40013 AATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGAAG 39954 Query 125856 AAGGTCAGCGAGTA 125869 | || ||||||| Sbjct 39953 AGAGTAGGCGAGTA 39940 >seq15962 Length=33107 Score = 165 bits (182), Expect = 1e-35 Identities = 546/840 (65%), Gaps = 33/840 (4%) Strand=Plus/Minus Query 125037 AAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGAT 125096 ||||| |||| ||||| ||||| | || ||||| ||||| ||||||||| | | | Sbjct 16079 AAGGCCGAGGCTTCCTTCTGGACAGCTGAGGAGGTGGATCTTTCCAAGGACATCCAGCAC 16020 Query 125097 TGGGAGACTCGTTTGA-CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTT 125155 || ||| || ||| | | | | ||| || | || ||||| || || | || ||||| Sbjct 16019 TGAGAG-CT-GTTGAAGCCGGAG--GAGAGATACTTCATATCTCATGTTCTCGCTTTCTT 15964 Query 125156 TGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGAC 125215 ||| | ||||| || || || || ||| || || ||||| ||||| || Sbjct 15963 TGCAGCTAGTGATGGCATAGTGAATGAAAATTTGGTGGAGCGATTTAGCCAAGAAGTGCA 15904 Query 125216 CATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGA 125275 ||| |||| | || || || || |||||||| || || ||| | || || || Sbjct 15903 AATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGA 15844 Query 125276 AATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCT 125334 ||||||| | || ||||||| |||||| ||||| ||| | || || |||| Sbjct 15843 AATGTACAGTCTCCTTATTGACACTTACATTAAAGATCC-CAAAGAAAGGGAATTTCTCT 15785 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA 125394 | || || || | || |||| | | | || ||||| | |||| | || |||| Sbjct 15784 TCAATGCCATTTAAACAATGCCTTGTGTGAAGAAGAAGGCAGACTGGGCCTTGCGTTGGA 15725 Query 125395 TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCA 125454 | | ||| | || | | || | || || || || |||||| | || || | Sbjct 15724 TTGGGGACAAAGAGGCCACCTATGGAGAAAG-------GCCTTTGCCGCCTTGGAAGGAA 15672 Query 125455 TCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCG 125514 |||||||||| ||| |||||| | || || ||||||||||| || ||||| ||||| | Sbjct 15671 TCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAAACGAGGACTAATGCCAG 15612 Query 125515 GACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCA 125574 | || ||| || ||| |||| | || |||||| |||||||||||||| || Sbjct 15611 GGCTCACGTTTTCCAATGAGCTTATTAGCAGGGATGAGGGCTTACACTGTGACTTTTCCT 15552 Query 125575 TTCTACTGTTTCGCAACTATCTGCGTC-----CCGAGTGCAGATCCAGCGATGAAAAGGT 125629 || |||| ||| | ||| | ||| | | || ||| || ||||| Sbjct 15551 GCCTGATGTT---CAAACACCTGTTACATAAACCGTGGG-AG---CAGAGAGTAAAAG-- 15501 Query 125630 CATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC 125689 | || | | | |||| || ||||| ||||| |||| || | || || | || Sbjct 15500 -----AAATAATTATCAATGCTGTTAGGATTGAACAGGAGTCCCTCCCGGAGGCCTTGCC 15446 Query 125690 GGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGA 125749 || | | ||||||||||| |||| ||||| ||||||| |||||||||||||| Sbjct 15445 CGTGAAGCTTATTGGCATGAATTGCACTTTAATGAAGCAGTACATTGAGTTTGTGGCAGA 15386 Query 125750 TCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTT 125809 | || || ||| || | ||||| ||| || | ||||||| ||||| || Sbjct 15385 CAGGCTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCAGAGTAGAGAATCCATTTGACTT 15326 Query 125810 CATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 |||| | ||| || || || || ||||| ||||| || ||||||| || ||||||| Sbjct 15325 CATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTA 15266 >seq3369 Length=196643 Score = 161 bits (178), Expect = 1e-34 Identities = 573/880 (65%), Gaps = 39/880 (4%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| | |||| || || ||| | ||||| || ||||| |||| ||| | ||| Sbjct 91343 TTTCCTATCGAGGATCACGATATCTGGCAGATGTATAAGAAGGCCGAGGCTTCCCTCTGG 91402 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || ||||| ||||| ||||||||| | | ||||| || ||||| Sbjct 91403 ACAGCTGAGGAGGTGGATCTTTCCAAGGACATCCAGCCCCGGGAGG------TG-CTGAA 91455 Query 125118 ACTGAGCGAGAG----TTTATATCGCA--CATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | | ||||| || ||| | || | || | || |||||||| | | ||||| Sbjct 91456 GCCGGAGGAGAGATACTTCATAGCTCATCCGTTCTCGCTTTCTTTGCAGCCAGTGATGGC 91515 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG 125231 | || || || ||| | || ||||| ||||| || ||| |||| || Sbjct 91516 CTAGTGAATGAAAATTGGGTGGAGCGATTTAGCCAAGAAGTGCAAATTACAGAAGTCCGC 91575 Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || | || |||||||| || || ||| | || || ||||||||| | || Sbjct 91576 TGTTTCTGTGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTACAGTCTCCTT 91635 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACAC 125350 ||||||| |||||| ||||| ||| | || || ||||| || || || || || Sbjct 91636 ATTGACACTTACATTAAAGATCC-CAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGAC 91694 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 |||| | | | || ||||| | |||| | || ||||| | | | | | | | Sbjct 91695 AATGCCTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGTTGGATTGGGGGCAA-AGGGC 91753 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | || | || | | || || || |||||| | || || |||||||||| ||| Sbjct 91754 CACCTATGGAGAACGTGTTGTAGCCTTTGCCGCCCTGGAAGGACTCTTCTTTTCCGGTTC 91813 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 ||||||| | || || ||||||||||| || |||| ||||| || || ||| || Sbjct 91814 TTTTGCGTCAATATTCTGGCTCAAGAAACGAAGACTGATGCCAGGGCTTACGTTTTCCAA 91873 Query 125531 CGAGTTTA-TATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||| ||| |||| |||| ||||| ||||||||||||||||| || |||| || Sbjct 91874 TGAGCTTATTATC-AGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CA 91929 Query 125590 ACTATCTGCGTCCCGA---GTGCAGATCCAGCGATGAAAAG--GTCATCAACATTGTAAC 125644 | |||| ||| | || | || ||| || ||||| || || | || Sbjct 91930 GACACCTGC-TCCATAAACGT-CGGA-GCAGAGAGTAAAAGAAGTAATTATCA------- 91979 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 |||| || ||||| ||||| ||| | || || || || | || || | | |||| Sbjct 91980 --ATGCTGTTAGGATGGAACAGGAGCTCCTCACGGAGGCCTTGCCAGTGAAGTTTATTGA 92037 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 ||||||||||| ||||| ||||||| |||||||||||||| | || || || Sbjct 92038 CATGAACTGCACTTTAATGAAGCAGTACATTGAGTTTGTGGCAGACAGGCTTATGCTGGA 92097 Query 125765 GTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATC 125824 | || | ||||| ||| || | ||||||| ||||| |||||| | ||| || Sbjct 92098 GCTGGGTTTTAGCAAGGTTTTCAGAGTAGAGAATCCATTTGACTTCATGGAGAACATTTC 92157 Query 125825 ACTAGAGGGTAAGACCAACTTTTTCGAGA-AGAAGGTCAG 125863 || || || ||||| ||||| || ||| || |||| || Sbjct 92158 TCTGGAAGGGAAGACTAACTTCTTTAAGAGAGTAGGTGAG 92197 >seq7191 Length=127218 Score = 140 bits (154), Expect = 5e-28 Identities = 389/595 (65%), Gaps = 4/595 (1%) Strand=Plus/Minus Query 69926 AAGGGCGTCATCGAGGAGCTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTG 69985 ||||| || | |||||||| ||||| | || ||||| || ||||| || || ||| Sbjct 41790 AAGGGAGTTTTGGAGGAGCTGCTGTGGTTTATCAAGGGATCCACAAATGCTAAGGAACTG 41731 Query 69986 AGCCGAAAGGGTGTACACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTC 70045 ||||| || | || ||| | ||| | || | ||||||| || Sbjct 41730 TCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCTGAGACTTTTTGGACAGCCTG 41671 Query 70046 GGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCAC 70105 || || ||| | ||||||| || || ||||| ||||| || || |||||||||||||| Sbjct 41670 GGATTTTCCGCCCGACAAGAAGGAGACCTGGGCCCAGTCTATGGCTTCCAGTGGAGGCAT 41611 Query 70106 TCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG 70165 | || | | || ||| | |||| || || ||||| || || || || || Sbjct 41610 TTTGGAGCAGACTACAAAGATATGAATTCAGATTACTCAGGTCAAGGAGTAGACCAGCTG 41551 Query 70166 CAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCA 70225 || | | | |||||||| |||| ||||| || || || || ||| | ||||| | Sbjct 41550 CAAAAAGTGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCC 41491 Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCA--CTGTTTGGCTCAGT 70283 ||||| || |||| | | ||||| || || || || || || | || | ||| Sbjct 41490 TGGAACCCAAAAGATCTTCCTTTGATGGCGCTGCCTCCCTGCCATGCTCTCTGCC--AGT 41433 Query 70284 TTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCC 70343 | || | | | || |||| ||| | || ||| || | |||||||| | Sbjct 41432 TCTATGTGGTGAACAGAGAACTGTCCTGCCAGCTATACCAGCGGTCAGGAGACATGGGTC 41373 Query 70344 TCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTA 70403 | ||||||||||| |||||||| |||||| || || | || |||||||||| ||||| | Sbjct 41372 TGGGTGTACCCTTCAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACACATCA 41313 Query 70404 CCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATC 70463 | |||||| | | || || ||||| || | || || || || | || | |||| Sbjct 41312 CAGGCCTGCAGCCAGGTGACTTTGTACATACTTTGGGAGATGCACATATTTACCTGAATC 41253 Query 70464 ACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCT 70518 |||| |||||| | || || || | || || || |||||||| || ||||| Sbjct 41252 ACATTGAGCCACTGAAAACCCAGCTTCAGCGAGAACCAAGACCTTTCCCTAAGCT 41198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740863217631320