Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2406 98.7 9e-16 >seq2406 Length=770489 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 13166 TGCAATCCTT----CATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||||||| ||||||| || || ||||| || ||||| || || || ||||| || Sbjct 395261 TGCAATCCTTACTTCATCTCTGCTGATGAGCTCATTGGAAAAGGTGAGTCCAGGCATGAG 395202 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||| || || | ||| |||||||||||||| || || || || || | |||||| || Sbjct 395201 ACCTCTCTTCTTTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTAC 395142 Query 13282 TGCTGCAAACGCTATCAACCTTTCACC 13308 || ||||| || | || ||||| || Sbjct 395141 AGCAGCAAAGGCCACCACTCTTTCCCC 395115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| |||||| Sbjct 404528 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 404469 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 404468 ATAAAATCAAAGGGATTTT 404450 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 |||||||||||||| | || |||||||||||||| |||| ||| || || ||||| Sbjct 389329 ATATAAGTATCTATTAGCAAACTATACATTTCTGAGTGAACATTCTCGATGAGAATTTGA 389270 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || ||||| ||||| | |||||||| ||||| || || Sbjct 389269 AAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTC 389232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430871270784114