Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq7191 293 2e-74 seq3663 102 6e-17 >seq7191 Length=127218 Score = 293 bits (324), Expect = 2e-74 Identities = 417/581 (72%), Gaps = 8/581 (1%) Strand=Plus/Plus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 |||||||| ||| || || | || ||||| || ||||| || || | ||||| |||||| Sbjct 41204 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGGGTTTTCAGTGGCTCAATGTGATTCAGGTA 41262 Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507 | || || ||||||| ||| || ||||| || || || | || || || | || || Sbjct 41263 AATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCTGTGATGTGTGC 41322 Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567 |||||||| ||||| ||| |||||||| ||||| |||||||| || | |||||||| Sbjct 41323 AATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCCATGTC 41382 Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACA 25627 || |||| |||||| ||||| || || || ||| || ||| || ||||| || | Sbjct 41383 TCCT-GACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACCACATAGAACTGGCAGA 41441 Query 25628 TGGTGTAGCACGGAGGAAGAGCTAT--AAGGCCCAAG-TCTTTAGGGTTCCAGGCGCACA 25684 | | ||| ||||| || || || |||| ||| ||||| ||||||||||| |||| Sbjct 41442 GAGCATGGCAGGGAGGCAGCGCCATCAAAGG---AAGATCTTTTGGGTTCCAGGCACACA 41498 Query 25685 CGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGAT 25744 |||||| | ||||| || |||||| |||| || ||||||||||| | Sbjct 41499 TGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGT 41558 Query 25745 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCC 25804 | || || || ||||| |||| |||| || |||| |||||||| |||| ||||| Sbjct 41559 CTACTCCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAATGCCTCC 41618 Query 25805 ACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTAT 25864 ||||||| || || || || || |||||||| |||| | | ||| ||| | | Sbjct 41619 ACTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGT 41678 Query 25865 CCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 25924 |||||||||||| ||| |||||||| |||||||| || || ||||| || || || | Sbjct 41679 CCAAAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCCT 41738 Query 25925 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 | | |||||||| || ||| ||||||||||||||| || Sbjct 41739 TAGCATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCC 41779 >seq3663 Length=525456 Score = 102 bits (112), Expect = 6e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || |||| |||||||| |||| |||||||||||| || || || || || |||| Sbjct 211971 TCATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGT 211912 Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 |||| |||| | | ||| ||| | |||| |||||||| ||| |||||||| | Sbjct 211911 CTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCAT 211852 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||| || || ||||| || || || || | |||||||| || Sbjct 211851 CCCAGATTTTCACTCCCTTGGAAGACAGTTCCTTAGCATTTGTGGATCC 211803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340049895200961