Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq7420 150 3e-31 seq1003 145 1e-29 seq1914 113 6e-20 seq7421 91.5 2e-13 >seq7420 Length=210200 Score = 150 bits (166), Expect = 3e-31 Identities = 335/495 (68%), Gaps = 6/495 (1%) Strand=Plus/Minus Query 9353 ATTCTACTAGCTGGGTAATGCCGTGGGTCATGAGTATGGAATTGTTGTAAACGAAGTTAA 9412 |||| || | |||| ||| ||||| || || ||||| |||| ||| | || | Sbjct 210199 ATTCCACAAACTGGTTAAGTCCGTGTTCTATCAGGATGGAGTTGTGGTAGAGAAACTGTT 210140 Query 9413 TGTAGTCATACTTTGTTTTATCAATCTCAAACGCATCCGGCATGAGAGAATGCCAGTGAT 9472 | ||| |||| | ||| |||| || | || |||| |||| ||||||||| | Sbjct 210139 TAAAGTTGTACTCCTGCTCATCTATCTAGAAGGTGTCGGGCAGCAGAGGATGCCAGTGGT 210080 Query 9473 ACAACATGTTAAACTCGGAAAATATACGATTTTGGTACTGGAACGAAGTACCAAAGAGCA 9532 | | |||||||||| ||| | | |||||||||||||| | || |||| Sbjct 210079 AGAGTGTGTTAAACTCTGAAGGAACCCAGTTTTGGTACTGGAATTGTTGAATGAACAGCA 210020 Query 9533 GTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCCGCTGAGCTGCTGAACATACTGCGTCA 9592 ||||| | |||| || | ||||| ||||||| | ||||| ||||| | | Sbjct 210019 ACTCGGGATCAAACCCCAGATTGAAGTGAGAGCCGCTCAAGTGCTGCACATAGTCTTGGA 209960 Query 9593 CGATAATGTTGATTGTTTCCCCGAT-AATGATGAGTCGAGTGGTCTGAAACAGTTGTTCG 9651 | ||| ||||| || | | || |||| |||| | || ||||| || | | || Sbjct 209959 GCACAATCTTGATCGTCTGTGCTATTAATG-TGAGCCTGGTAGTCTGGAATAACCGCTCA 209901 Query 9652 TCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGC 9711 ||| ||||| || || || |||| || ||||| || |||||| |||| | || ||| Sbjct 209900 TCATCCCATTGGGG-TGCTCCTGTTTGAGCACATCCCATACTCTGCTGTGCTGCCGCAGC 209842 Query 9712 CAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCC 9771 || || || || ||||||||||||||||||||||| ||||| ||||||| || ||||| Sbjct 209841 CAAATTGTGGCATACATCATGAGACCAGGCACCAGACCAAAGACCTCTTGCCCCACAGCA 209782 Query 9772 AGACGCATAT-TTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATC-TTTGA 9829 | |||| | ||| ||| | || ||| |||||||| | ||||| || ||||| Sbjct 209781 AACCGCAGGTGTTTGGGGAAGCAAGGCAGG-TAGATCATTTCTACCTGAGTGTCTTTTGA 209723 Query 9830 CCGAGGGGGGATACA 9844 | | |||||| |||| Sbjct 209722 CTGTGGGGGGGTACA 209708 >seq1003 Length=1033224 Score = 145 bits (160), Expect = 1e-29 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | || ||||| || | | || ||| ||| || || || || |||| || Sbjct 477330 ATGAGCCTGGTAGTCTGGAATAACCGCTCATCATCCCACTCAGGGTGCTCCTGTTTAAGC 477271 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| || |||||||||||||||| | |||||| || || |||||||||||||||||| Sbjct 477270 ACATCACATACTCTGTTGTGTTCCCGCAACCAGATTGTGGCATACATCATGAGACCAGGC 477211 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| |||| || || || || | |||| || || || | | || || Sbjct 477210 ACCAGACCAAAGACCTCATGCCCCACGGCAAATCGCAGATGCTCAGGGATATGAGGCGGG 477151 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | ||||| || ||||| | ||||||||||| || || ||||| ||| Sbjct 477150 TAGATCATCTCTACCTGAGTGTCCTTGACTGTGGGGGGATACACCTCTCCATCAATTATC 477091 Query 9862 TGA 9864 ||| Sbjct 477090 TGA 477088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| || ||||| || ||| | ||| ||| | || Sbjct 476123 TCTTACCCCATGGCCCAGTCCTTTGGTAAAGGCAGGTCCTTGTTTTTGATCTGTCTTGAA 476064 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || || || |||||| |||| || |||||||| | || ||||| || || || Sbjct 476063 AAACTGATGGGTAAAGTGTTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGTGGGTC 476004 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| | || | || ||| |||||||| ||| Sbjct 476003 AGGGATGAACTTTCTTCTTAGGAGAACTTTTTCCAGAAC 475965 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| ||||| | |||||||| || |||| | || ||||| || || | Sbjct 475532 TCACCTTTCACCCCCATGGGAGTTGGGCAGTCGTCGGCTACAGGAGGAAGGGCTCTGGTA 475473 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| || ||||| |||||||| || ||| | |||| || ||||| | Sbjct 475472 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAATTTTTGTAGCCATAGTGTGCATTGTAAGTT 475413 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 475412 GGCGGACTGTCAATCAAATGTGATCTGGCTGAA 475380 Score = 86.0 bits (94), Expect = 9e-12 Identities = 200/299 (67%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| |||| | |||||||| || || | |||||||| ||||| Sbjct 477862 CTTACCCTGCCAGCATTTTGCCTGGTGAACGACTCCACAAACTGGGTAAGTCCGTGTTCT 477803 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 || || ||||| |||||||| | || | | ||| |||| | ||| |||| Sbjct 477802 ATCAGGATGGAGTTGTTGTAGAGAAACTGTTTAAAGTTGTACTCCTGCTCATCTATCTGG 477743 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | || |||| |||| ||||||||| || | |||||||||| | | || || Sbjct 477742 AAGGTGTCAGGCAGCAGAGGATGCCAGTGGTAGAGTGTGTTAAACTCTGCAGCGATCCGG 477683 Query 9502 TTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGG 9561 |||||||||||||| || |||| || || | |||| || | ||||| Sbjct 477682 TTTTGGTACTGGAATTGTTGGTTGAACAGCAACTCAGGATCAAACTTCAGTTTGAAGTGA 477623 Query 9562 TAGCCGCTGAGCTGCTGAACATA--CTGCG-TCACGATAATGTTGATTGTTTCCCCGAT 9617 |||||||| | ||||| || || || || |||| ||| ||||| || || || || Sbjct 477622 TAGCCGCTCAAGTGCTGTACGTAGTCTTCGATCAC---AATCTTGATCGTCTCTCCTAT 477567 >seq1914 Length=1406372 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| ||||||||||| | || || ||||| ||| Sbjct 1057508 AAGCCCATCTCACCACCAAATGTGCTTGGTTTCCAGTACTCGGGAGAACAGATAGGATTC 1057449 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| ||||| || | ||| | || ||||| ||||||||| Sbjct 1057448 CCTAGGAGACCCTTGAGGGAAAAGGGAGCTCCAATCTCTATCATACTCTCCCCGAAGATG 1057389 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||| | | | ||| | ||| ||||||| || || |||||| Sbjct 1057388 GAGTTGGGCAGGCACTTTTCGAGAAGCAGTCCTGGGTAGAACTCCAAGGCATCAATGTCT 1057329 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || | || | || || || || ||||| |||||| Sbjct 1057328 CCATATAACTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 1057287 >seq7421 Length=13201 Score = 91.5 bits (100), Expect = 2e-13 Identities = 190/282 (67%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 8695 ACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAA 8754 ||| ||||| ||||| | |||| |||||||| || | ||| | |||| ||| ||| Sbjct 447 ACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTTAAA 388 Query 8755 CCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGC 8814 || || ||||| || || || || ||||||||||| || ||||| ||| || | Sbjct 387 ACCTACTTCTCCTCCAAAAGTACTCGGTTTCCAGTACTGAGGAGAGCATATGGAGTAACC 328 Query 8815 CATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGC 8874 ||| ||| |||| | ||| ||| | || |||| || | ||| |||| | ||||| || Sbjct 327 CATAAGGGCTTTCAAGGAGAACAGTGCTCCCACTTCTACCATGGTCTCCCAAAAGATAGC 268 Query 8875 GTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCC 8934 | | || ||||| || | || | | | || | || |||||| || ||| ||| Sbjct 267 ATCTGAACAAGGCTTATCTATCAGAAGGGCAGGATAGAGCTACACAGCATCAATG--TCC 210 Query 8935 GTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 | |||| | || || || | ||||| || |||||||| Sbjct 209 ATTCAGGGTCTCCAGCTCCGCGGTCATTTCTTTGTCTCCTGT 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708337421760080