Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq468 152 8e-33 seq7851 150 3e-32 seq868 136 6e-28 >seq468 Length=988017 Score = 152 bits (168), Expect = 8e-33 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||||||||| |||||||| ||||| ||||| || || |||| Sbjct 553362 GAGACAACATCCAGGGCATCACCAAGCCCGCTATCCGGCGTCTCGCTCGGCGCGGGGGAG 553421 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||||| |||| || | | || ||||||| || | || ||||| | ||||| Sbjct 553422 TCAAGCGCATCTCCGGCCTCATTTACGAAGAGACCCGCGGCGTGCTGAAGGTGTTCCTGG 553481 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || ||| || ||| ||||||||||| || || ||||| |||||| Sbjct 553482 AGAACGTCATCCGGGACGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTCACCG 553541 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||||| | ||||| || | || || || ||||| Sbjct 553542 CCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 553578 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 881960 CGCTAAGCGCCACCGCAAAGTCCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 882019 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||||||||| |||| || | ||||||| |||| Sbjct 882020 CCGGCGCCTGGCCCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTCATCTATGAGGAGAC 882079 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 882080 CCGCGGGGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 882139 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || ||| ||||||| | ||||| || | || || || || Sbjct 882140 GCACGCCAAGCGCAAGACGGTGACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 882199 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 882200 CCGCACCCTCTACGGCTTTGGTGGTTAA 882227 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 886793 CGCTAAGCGCCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 886734 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||||||||| |||| || | |||| || |||| Sbjct 886733 CCGGCGCCTGGCCCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 886674 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 886673 CCGCGGGGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 886614 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || ||| ||||||| | ||||| || | || || || || Sbjct 886613 GCACGCCAAGCGCAAGACGGTGACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 886554 Query 16672 CCG 16674 ||| Sbjct 886553 CCG 886551 Score = 127 bits (140), Expect = 3e-25 Identities = 189/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || || |||| | || || || || ||||| || ||||| ||||| || || Sbjct 717465 CGCCAAACGCCACCGCAAAGTCCTGCGTGACAATATCCAGGGCATCACTAAGCCTGCCAT 717524 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||| | ||||| || ||||| || || ||||| | ||||| | ||||||| |||| Sbjct 717525 CCGTAGACTGGCGCGACGTGGCGGGGTGAAGCGCATTTCTGGTCTCATCTATGAGGAGAC 717584 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | || || | | || || | |||||| | || || || Sbjct 717585 CCGTGGAGTTCTGAAGGTGTTTCTGGAAAATGTGATTCGGGATGCTGTGACTTACACAGA 717644 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || ||||| || ||| ||||||| | ||||| || | ||||| || || Sbjct 717645 GCACGCTAAGCGCAAGACAGTGACCGCCATGGACGTGGTCTACGCGCTCAAACGGCAGGG 717704 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| ||| | ||| Sbjct 717705 TCGCACCCTGTATGGTTTCGGAGGGTAA 717732 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || || |||| | ||| || || || ||||| || ||||||||||| || || Sbjct 685054 CGCCAAACGCCACCGCAAAGTTCTGCGCGACAATATCCAGGGCATCACCAAGCCTGCCAT 685113 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||| || ||||| ||||| |||| || | | ||||| |||| Sbjct 685114 TCGGCGCTTGGCCCGTCGCGGCGGAGTTAAGCGCATCTCCGGCCTCATTTATGAGGAGAC 685173 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||| | ||| ||| |||| || || || ||| || || Sbjct 685174 CCGCGGGGTGCTCAAGGTTTTCTTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 685233 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| ||| |||||||| | ||||| || | || || || || Sbjct 685234 GCACGCCAAGCGCAAGACTGTGACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 685293 Query 16672 CCG 16674 ||| Sbjct 685294 CCG 685296 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| || ||||| || || || ||| Sbjct 756858 CGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGCCTGGCCCGCCGCGGCGGA 756917 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| |||| || | |||| || |||| || | || | ||| | ||||| Sbjct 756918 GTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTTTTCCTG 756977 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||| || ||| || |||||||| || || ||||| || ||| Sbjct 756978 GAGAACGTGATTCGGGATGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACGGTGACC 757037 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| | ||||| || | || || || ||||| | | || || || ||| | Sbjct 757038 GCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGAGGC 757097 Query 16697 TAATCT 16702 ||| || Sbjct 757098 TAAACT 757103 Score = 122 bits (134), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 718502 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 718444 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || ||||||||||| |||| || | |||| || |||| Sbjct 718443 TCCGGCGCCTGGCCCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 718384 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | || || ||| ||| |||| || || || ||| || | Sbjct 718383 CCCGCGGGGTGCTCAAGGTTTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 718324 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || ||||||| | ||||| || | || || || | Sbjct 718323 AGCACGCCAAGCGCAAGACGGTGACAGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 718264 Query 16671 GCCG 16674 |||| Sbjct 718263 GCCG 718260 Score = 122 bits (134), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || || ||||| || ||||||||||| || | Sbjct 738389 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAATATCCAGGGCATCACCAAGCCCGCCA 738331 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || ||||||||||| |||| || | |||| || |||| Sbjct 738330 TCCGGCGCCTGGCCCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 738271 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | || || ||| ||| |||| || || || ||| || | Sbjct 738270 CCCGCGGGGTGCTCAAGGTTTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 738211 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || ||| ||||||| | ||||| || | || || || | Sbjct 738210 AGCACGCCAAGCGCAAGACGGTGACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 738151 Query 16671 GCCG 16674 |||| Sbjct 738150 GCCG 738147 >seq7851 Length=153147 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | || || || |||||||| || ||||||||||| || || Sbjct 121864 CGCTAAGCGTCACCGCAAAGTCCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 121923 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||||||||| |||| || | ||||||| |||| Sbjct 121924 CCGGCGCCTGGCCCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTCATCTATGAGGAGAC 121983 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 121984 CCGTGGGGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 122043 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || ||| ||||||| | ||||| || | || || || || Sbjct 122044 GCACGCCAAGCGCAAGACGGTGACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 122103 Query 16672 CCG 16674 ||| Sbjct 122104 CCG 122106 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | || || || |||||||| || ||||||||||| || || Sbjct 128155 CGCTAAGCGTCACCGCAAAGTCCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 128096 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||||||||| |||| || | ||||||| |||| Sbjct 128095 CCGGCGCCTGGCCCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTCATCTATGAGGAGAC 128036 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 128035 CCGTGGGGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 127976 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || ||| ||||||| | ||||| || | || || || || Sbjct 127975 GCACGCCAAGCGCAAGACGGTGACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 127916 Query 16672 CCG 16674 ||| Sbjct 127915 CCG 127913 Score = 136 bits (150), Expect = 6e-28 Identities = 192/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| | || || || |||||||| || ||||||||||| || ||| Sbjct 88478 GCTAAGCGCCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATC 88537 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || ||||||||||| |||| || | |||| || |||| Sbjct 88538 CGGCGCCTGGCCCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 88597 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 88598 CGCGGGGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGAG 88657 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| || ||| ||||||| | ||||| || | || || || ||| Sbjct 88658 CACGCCAAGCGCAAGACGGTGACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 88717 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || ||| | ||| || Sbjct 88718 CGCACCCTCTACGGCTTCGGAGGCTAAGCT 88747 >seq868 Length=282074 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 248437 CGCTAAGCGCCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 248496 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||||||||| |||| || | |||| || |||| Sbjct 248497 CCGGCGCCTGGCCCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 248556 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 248557 CCGCGGGGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 248616 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || ||| ||||||| | ||||| || | || || || || Sbjct 248617 GCACGCCAAGCGCAAGACGGTGACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 248676 Query 16672 CCG 16674 ||| Sbjct 248677 CCG 248679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79055856006801