Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq15962 165 9e-36 seq15872 147 2e-30 seq3369 131 2e-25 seq1935 87.8 2e-12 seq2406 86.0 7e-12 >seq15962 Length=33107 Score = 165 bits (182), Expect = 9e-36 Identities = 505/781 (65%), Gaps = 13/781 (2%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| || |||||||| || | ||| ||| ||| | ||||| | |||||| Sbjct 15201 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTAGGACTCGACATCACTCCCATCC 15260 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || | ||||| || || || || || ||||| ||||||| || || | Sbjct 15261 GCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTCT 15320 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 |||| || ||||||||||| || | | || | || || ||||||| || | ||| Sbjct 15321 CCATGAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGCTCC-AGCATA 15379 Query 21306 ATC-TATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 | | | ||||| ||||| || || || || |||||| |||||||| || || | Sbjct 15380 AGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATAAGC 15439 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 || || || | || | | | | | ||| || || || | | |||||| Sbjct 15440 TTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTAACAGCATTGATAATTATT 15499 Query 21425 TTTATTATCCTAGATG-TACTAGGGGG-ATACAATAATTGTTTAAACATCAAACATGCAA 21482 | | ||| || || | | | || || || | ||||| ||||||| || | || Sbjct 15500 TCTTTTACTCTC--TGCTCCCACGGTTTATGTAACAGGTGTTTGAACATCAGGCAGGAAA 15557 Query 21483 AATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCA 21542 | ||||| || || || |||||||| || || | ||||| ||||| || | || |||| Sbjct 15558 AGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCA 15617 Query 21543 TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCT 21602 ||| ||||| || || | ||| |||||||| ||||| | || |||||||| || || | Sbjct 15618 TTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTT 15677 Query 21603 CAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATT 21662 | | ||| ||||| || | ||| || || || | ||||| ||| ||||| Sbjct 15678 CCAAGGCGGCAAAGGC-------CTTTCTCCATAGGTGGCCTCTTTGTCCCCAATCCAAC 15730 Query 21663 TTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 ||||| | |||||| | || | |||| ||||| | ||| || || || ||| Sbjct 15731 GCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAAATGGCATTGAAGAGAA 15790 Query 21723 GAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAAT 21782 | |||| | ||| | ||| ||| ||||||||||||| Sbjct 15791 ATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAAT 15850 Query 21783 GTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCT 21842 |||| ||||| || || || || || || || ||||| | || |||| | ||| || | Sbjct 15851 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATTTGCACTT 15910 Query 21843 CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATG 21902 | |||||| | |||| |||||||| ||||| |||||||| || ||||| || | Sbjct 15911 CTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTAGCTGCAAAGAAAG 15970 Query 21903 C 21903 | Sbjct 15971 C 15971 >seq15872 Length=96178 Score = 147 bits (162), Expect = 2e-30 Identities = 475/737 (64%), Gaps = 7/737 (1%) Strand=Plus/Plus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 ||||| | | |||| | ||||| || | ||||| || || || || || ||||| ||| Sbjct 39919 GACATCACTACCATCTGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 39978 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 |||| || || ||||| || ||||||||||| || | | || || || || Sbjct 39979 TCCAGAGAAATGTTCTCCATGAAGTCAAATGGATTCTCTACTCTGAAAGCCTTGCTAAAA 40038 Query 21290 CCCAGTTCTGATAATAATC-TATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348 ||||| || | |||| | | ||||| ||||| || || || || |||||| || Sbjct 40039 CCCAGCTCC-AGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCA 40097 Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408 |||||| || || | || || || | || | || | || | ||| || || Sbjct 40098 ATTCATGCCAATAAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAAC 40157 Query 21409 GGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATAC--AATAATTGTTTA 21466 || | | ||||| | | ||| || || | | || || | | ||||| Sbjct 40158 AGCATTGATAATTACTTCTTTTACTCTC--TGCTCCAACGGTTTATGTAGCAGGTGTTTG 40215 Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 ||||||| || ||||| ||||| || || || ||| |||| || || | ||||| ||| Sbjct 40216 AACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAA 40275 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 || || | || ||||| | ||||| || || | ||| |||||||| ||||| | || Sbjct 40276 AACGTGAGCCCTGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCA 40335 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 |||||||| || | || || || ||||| || || | ||| || || || | ||| Sbjct 40336 GAAAAGAAGATTTCTTCCACAGCGGCAAAGGCTG-TAGCCTTTCTCCATAGGTGGCCTCT 40394 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCA 21706 || ||| ||||| ||||| | |||||| | || | |||| ||||| | | Sbjct 40395 TTGTCCCCAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAA 40454 Query 21707 ATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 || || || || | | | |||| | ||| | ||| | Sbjct 40455 ATGGCATTGAAGAAAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGA 40514 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 || |||||||||||||||| ||||| || || || || ||||| || ||||| || Sbjct 40515 CTGTACATTTCAGAATGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCT 40574 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 |||| | ||| || || |||||| | |||| |||||||| ||||| |||||| Sbjct 40575 TCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCA 40634 Query 21887 CTGGCGGCAAAAAATGC 21903 ||||| ||||| || || Sbjct 40635 CTGGCTGCAAAGAAAGC 40651 >seq3369 Length=196643 Score = 131 bits (144), Expect = 2e-25 Identities = 292/443 (66%), Gaps = 1/443 (0%) Strand=Plus/Minus Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 ||| | ||||||| || ||||| ||||| || ||||| ||||| || | || | ||| Sbjct 91933 TGTCTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGATAATAAGCTCA 91874 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAAT 21580 || ||||| || | || ||||| | || || || || | ||| |||||||||||||| Sbjct 91873 TTGGAAAACGTAAGCCCTGGCATCAGTCTTCGTTTCTTGAGCCAGAATATTGACGCAAAA 91814 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTA 21640 | || |||||||| | || || | ||| ||||| || || | ||||| || || || Sbjct 91813 GAACCGGAAAAGAAGAGTCCTTCCAGGGCGGCAAAGGCTACAACACGTTCTCCATAGGT- 91755 Query 21641 GATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATT 21700 | |||| || ||||| ||||| | |||||| | || | |||| ||| Sbjct 91754 GGCCCTTTGCCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATT 91695 Query 21701 GTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNN 21760 || ||||| || || || ||| | |||| | ||| | ||| Sbjct 91694 GTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATA 91635 Query 21761 NNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACAT 21820 ||| ||||||||||||||||| ||||| || || || || || || | ||||| Sbjct 91634 AGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAG 91575 Query 21821 CTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATT 21880 | | |||| | ||| || || |||||| | || | |||||||| |||| Sbjct 91574 CGGACTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCCAATTTTCATTCACTAGG 91515 Query 21881 CCATCACTGGCGGCAAAAAATGC 21903 ||||||||||| ||||| || || Sbjct 91514 CCATCACTGGCTGCAAAGAAAGC 91492 >seq1935 Length=458691 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 130678 CAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAATTTTTTGAATCTT 130737 ||||| | ||| ||| ||| | ||| || || | || ||||||||||| ||| |||| Sbjct 367154 CAAGATTGGCTTCCAGTGAGGCACAGAAAGTCTGGCTGAATGTCCAATTCCTTGTGTCTT 367095 Query 130738 CAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGGCAAGTAACATA 130795 ||||||| || || ||||||| ||||||||||||||| ||||||| | | |||| Sbjct 367094 CAGAAAAATAGAAACATTTATGTCCAAATCCAATCCAGTTTCTTGGGCAGGAAGCATA 367037 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 130678 CAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAATTTTTTGAATCTT 130737 ||||| | ||| ||| ||| | ||| || || | || ||||||||||| ||| |||| Sbjct 289353 CAAGATTGGCTTCCAGTGAGGCACAGAAAGTCTGGCTGAATGTCCAATTCCTTGTGTCTT 289294 Query 130738 CAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGGCAAGTAACATA 130795 ||||||| || || || |||| ||||||||||||||| ||||||| | | |||| Sbjct 289293 CAGAAAAATAGAAACACTTATGTCCAAATCCAATCCAGTTTCTTGGGCAGGAAGCATA 289236 >seq2406 Length=770489 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| || |||||| ||| | ||||| | | | Sbjct 404590 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCCGCCATAACTGCAAAAC 404531 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || ||||| || || || || Sbjct 404530 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 404471 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 404470 CCATAAAATCAAAGGGATTTTC 404449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531760132184680