Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7191 147 6e-30 seq606 100 7e-16 seq2418 91.5 4e-13 >seq7191 Length=127218 Score = 147 bits (162), Expect = 6e-30 Identities = 403/614 (66%), Gaps = 10/614 (2%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || || | ||| || || || ||||||||| || | || || || |||||| Sbjct 41823 TTTCCTCTGCTTATAACCAAACGTGTATTCTGGAAGGGAGTTTTGGAGGAGCTGCTGTGG 41764 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| |||||||| || ||||| | | || || ||||| |||||| Sbjct 41763 TTTATCAAGGGATCCACAAATGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATCTGGGAT 41704 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAG--TTGGTCTTGTCGACAACGAAGAAGGTG 111492 | |||||||| | |||||| | || ||| | || || || | ||||||| | Sbjct 41703 GCCAATGGATCCTGAGACTTTTTGGA--CAGCCTGGGATTTTCCGCCCGACAAGAAGGAG 41646 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC 111552 | || || ||||| || || || || ||| | || ||||| |||||||||||| ||| Sbjct 41645 ACCTGGGCCCAGTCTATGGCTTCCAGTGGAGGCATTTTGGAGCAGACTACAAAGATATG- 41587 Query 111553 ACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609 | ||| || | ||| || ||| || || | || || || ||||| || | Sbjct 41586 --AATTCAGATTACTCAGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCA 41529 Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAA 111669 | | |||||| | | | || || ||| |||| ||||||||||| | | Sbjct 41528 AAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCCTT 41469 Query 111670 AAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTT 111729 ||||| || || || || ||| | | |||||||| ||||| || | || | Sbjct 41468 TGATGGCGCTGCCTCCCTGCCATGCTCTCTGCCAGTTCTATGTGGTGAACAGAGAACTGT 41409 Query 111730 CATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789 | ||||| | || ||||| || | || || ||||| ||||| || || || ||||| | Sbjct 41408 CCTGCCAGCTATACCAGCGGTCAGGAGACATGGGTCTGGGTGTACCCTTCAACATTGCCA 41349 Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCA 111849 | || || || || || | | | || || || | ||| || | || ||||| || Sbjct 41348 GCTATGCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGCAGCCAGGTGACTTTG 41289 Query 111850 TTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGT 111909 | || | | |||||||| ||| ||||| || |||||||| |||| ||||| ||| Sbjct 41288 TACATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGCCACTGAAAACCCAGC 41229 Query 111910 TGAAGCGCAAACCA 111923 | |||| ||||| Sbjct 41228 TTCAGCGAGAACCA 41215 >seq606 Length=273764 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || || || || ||| Sbjct 40784 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACGGGTACCCCATACATG 40725 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| ||||| || ||| ||||||||| |||| || ||||| | Sbjct 40724 CTCTACAAAGATTCCTGCAATCGGAAGAGCAACCAGCAAAACCTGGGAACAATCAAATGC 40665 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||||||||| || || || | || || ||| Sbjct 40664 AGCAACCTATGCACAGAAATAGTAGAGTATACC 40632 >seq2418 Length=977819 Score = 91.5 bits (100), Expect = 4e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||| | || ||||| || ||||||||||| | ||| || Sbjct 180959 GAACGTGTTGTAGCCTTTGCCGCCGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 180900 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || |||||||| |||||| | ||| Sbjct 180899 ATATTCTGGCTCAAGAAACGAGGACTGATGCCAGGGCTCACGTTTTCCAATGAGCTTATT 180840 Query 22609 AGCCGAGATGAGG 22621 ||| | ||||||| Sbjct 180839 AGCAGGGATGAGG 180827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303000294644774