Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq20301 127 1e-24 seq18024 127 1e-24 seq10580 127 1e-24 seq6961 127 1e-24 seq17664 113 3e-20 seq16198 104 2e-17 seq10808 104 2e-17 seq7689 104 2e-17 seq1925 89.7 3e-13 seq944 87.8 1e-12 seq1660 86.0 4e-12 seq1696 84.2 1e-11 seq2088 82.4 5e-11 >seq20301 Length=17530 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 3984 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 3925 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 3924 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 3890 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||| Sbjct 602 CTCTCTCTTCAAAGTTCTTTTCAACTTCCCTTAACGGTACTTGTTGGCTATCGGTCTCGT 543 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 542 GCCGGTATTTAGCCTTA 526 >seq18024 Length=276033 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 273117 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 273058 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 273057 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 273023 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 269706 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGT 269647 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 269646 GCCGGTATTTAGCCTTA 269630 >seq10580 Length=26653 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 11847 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 11906 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 11907 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 11941 >seq6961 Length=175213 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 165655 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 165714 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 165715 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 165749 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 169033 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGT 169092 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 169093 GCCGGTATTTAGCCTTA 169109 >seq17664 Length=22148 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| |||| || |||||||| Sbjct 9586 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGAAGGGACAGTGGGAATCTCGT 9527 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || |||||||||||||||||| Sbjct 9526 TCATCCATTCATGTGCATCACTAATTAGATGACGA 9492 >seq16198 Length=237580 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||| Sbjct 19122 CTCTCTCTTCAAAGTTCTTTTCAACTTTTCCTTACGGTACTTGTTGGCTATTGGTCTCGT 19063 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 19062 GCCAGTATTTAGCCTTA 19046 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||| |||||| || |||||||| ||||| || |||||| | Sbjct 21950 AAGCCCGTTCCCTTGGCTGAGGTTTCACTGGATAGTAGGTAGGGATGGTGGGAATCTCAT 21891 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||| || Sbjct 21890 TCATCCATTCATGCATGTCACTAATTAGATGATGA 21856 >seq10808 Length=7174 Score = 104 bits (114), Expect = 2e-17 Identities = 71/78 (91%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC-G 20005 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | Sbjct 5427 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCTG 5368 Query 20006 CGGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 5367 CCG--GTATTTAGCCTTA 5352 >seq7689 Length=65901 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||| | |||||||| ||||| || |||||||| Sbjct 64521 AAGCCCTTTCCCTTGGCTGTGGTTTCGTTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 64580 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| ||| ||||||||||| || Sbjct 64581 TCATCCATTCATGCGCATCATTAATTAGATGATGA 64615 >seq1925 Length=520723 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | | |||| ||| |||||||||||| ||||| || |||||| ||| | || Sbjct 381499 CAACACAAGAGGAAGGGTGGACTCCTTTTGAATGTTGTAGTCTGACAAAGTGCGTCCATC 381440 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||| | || || | ||||| || || Sbjct 381439 TTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGAACAGA-GGAATTCCTTCCTTATC 381381 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | || |||| |||||| || | || || || Sbjct 381380 CTGGATCTTGGCCTTGACATTTTCTATAGCATCTGAGGGTTCAACCTCAAGCGTGATGGT 381321 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || | ||||||||| || ||||| || || Sbjct 381320 CTTCCCAGTAAGGGTTTTCACAAAAATCTGTATTTT 381285 >seq944 Length=800573 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||| || || || |||||| || | | || Sbjct 497751 CAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTCTAGTCTGACAAAGTACATCCATC 497692 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | || || || || Sbjct 497691 TTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCGTCCTTATC 497632 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | || |||| |||||| || | | || || Sbjct 497631 CTGGATCTTGACCTTGACATTTTCTATAGCATCTGAGGGTTCAACCTCAAGCGAGATGGT 497572 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | || ||||| ||| |||||||| || Sbjct 497571 CTTCCCCGTAAGGGCTTTCATGAAAATCTGCATCTT 497536 >seq1660 Length=831338 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||| |||| || |||||| |||| | || Sbjct 181687 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGGTGTAGTCTGACAAAGTACGTCCATC 181628 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 181627 TTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCCGGAGGAATTCCTTCCTTATC 181568 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| |||||| || | || || || Sbjct 181567 CTGGATCTTGGCCTTGACATTTTCTATAGTATCCGAGAGTTCAACCTCGAGCGTGATGGT 181508 Query 38285 TTTACCCGTCAAGG-TTTTCACGAATATCTGCATGTT 38320 || || || | || |||| ||| |||||||| || Sbjct 181507 CTTCCCAGTAAGGGTTTTTTTAGAAAATCTGCATTTT 181471 >seq1696 Length=1012329 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||| | | |||||| ||| |||||||||||| ||||| || || ||| |||| | || Sbjct 926855 CAACCCAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCTGATAAAGTACGTCCATC 926914 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 926915 TTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCCGGAGGAATTCCTTCCTTATC 926974 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| ||||| || | || | || Sbjct 926975 CTGGATCTTGGCCTTGACATTTTCTATAGTATCCGAGGGCTCAACCTCAAGCGTGGTGGT 927034 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || | ||| || ||||| |||||||| || Sbjct 927035 CTTCCCAGTAAGGGTGTTTACGAAAATCTGCATTTT 927070 >seq2088 Length=1579367 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956 ||||| ||||||| |||||||||||| |||||||| ||||| || ||||| || Sbjct 582254 AAGCCTGTTCCCTCCTTTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGAGAATCTTGT 582195 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 ||||||||||||| |||||||||||| |||| Sbjct 582194 CCATCCTTTCATGCGTGTCACTAATTAGCTGAC 582162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334860833550467