Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3369 246 3e-60 seq15872 212 7e-50 seq15962 206 3e-48 seq2418 116 4e-21 seq16174 105 7e-18 >seq3369 Length=196643 Score = 246 bits (272), Expect = 3e-60 Identities = 421/604 (70%), Gaps = 9/604 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTG 93139 || |||| | ||| |||||||| |||||||| || |||| ||||| || ||||||| Sbjct 91929 TGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTC-TGATAATAAGCTCATTG 91871 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 || || | ||||| | ||||| ||||||||||||||| |||||||| |||||| | Sbjct 91870 GAAAACGTAAGCCCTGGCATCAGTCTTCGTTTCTTGAGCCAGAATATTGACGCAAAAGAA 91811 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || ||||| || | ||||||| ||| ||||| || |||| |||||| || | | || Sbjct 91810 CCGGAAAAGAAGAGTCCTTCCAGGGCGGCAAAGGCTACAACACGTTCTCCATAGGTGGCC 91751 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | | ||||| || |||||||| || || ||||| | |||||| | ||| Sbjct 91750 CT-TTGCCCCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTC 91692 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 || || || || || || | || | || | | |||| ||||| || || || | Sbjct 91691 TCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGG 91632 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| |||||||||||||| | || ||||| ||||||||||| || ||||||| | Sbjct 91631 AGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGG 91572 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 |||| || || ||||||||||| ||||| ||| || ||||||||| |||| ||| Sbjct 91571 ACTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCCAATTTTCATTCACTAGGCCA 91512 Query 93500 TCGGATGCTGCaaaaaaaGC--CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 || |||||||| ||||| || ||| ||| || | | |||| || || | Sbjct 91511 TCACTGGCTGCAAAGAAAGCGAGAACGGATGAGCTATGAAGTATCTCTCCTCCGGCTTCA 91452 Query 93558 GCTTATCCCAATCGGATAGA--TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 || |||| || | || || || |||||||| || || || | ||||| | || Sbjct 91451 GCACCTCCC--GGGGCTGGATGTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAGGGA 91394 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || || || || || ||||| | ||| || || |||| | || ||||| |||||||| Sbjct 91393 AGCCTCGGCCTTCTTATACATCTGCCAGATATCGTGATCCTCGATAGGAAAGATGACAAA 91334 Query 93676 ACGA 93679 ||| Sbjct 91333 GCGA 91330 >seq15872 Length=96178 Score = 212 bits (234), Expect = 7e-50 Identities = 480/716 (67%), Gaps = 7/716 (1%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || ||||| || |||||||| ||| ||| |||||||| || | ||| Sbjct 40057 CTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATAAGCTTC 40116 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || | || || || | ||| || | || || ||| || | | | | |||| Sbjct 40117 ACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAACAGCATTGATAATTACTTCT 40176 Query 93044 ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||||||| | ||||| |||| | | ||| |||| | ||| |||||||| Sbjct 40177 TTTACTCTCTGCTCCAACGGTTTATGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCA 40236 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAACAG 93162 ||||| || || | | || || || ||||||| || || | ||||| | ||| Sbjct 40237 CAGTGTAAGCCCTCACCCC-TGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATCAG 40295 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 |||||||||||||||||| |||||||| |||||| ||||||||| || || ||||||| Sbjct 40296 TCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTTCTTCCAC 40355 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 || ||||| || | | ||| || | | || || | ||||| || Sbjct 40356 AGCGGCAAAGGCTGTAGC-CTTTCTCCATAGGTGGCCTCTTTGTCCCCAATCCAACGCAA 40414 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||||| || || || ||||| | ||||| | ||||| || || || || | | || Sbjct 40415 GGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAAATGGCATTGAAGAAAAATTC 40474 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 | || | | |||| ||||| || || || | ||| |||||||||||||| || Sbjct 40475 CCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTAC 40534 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || ||||| |||||||| ||||| |||||||| ||||| || || ||||||||||| Sbjct 40535 GTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCTTCTGTAATTTGCACTTCTTG 40594 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 ||||| ||| || | ||||||||| ||||| ||||| |||||||| ||||| | Sbjct 40595 GCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTGGCTGCAAAGAAAGCAAG 40654 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGATAGATCT 93580 | ||| ||| || | | |||| || || ||| ||||| | |||| || Sbjct 40655 AACATGAGATATGAAGTATCTCTCCTCCGGCTTCAGCAGCTCCCAGTGCTGGAT--GTCC 40712 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || |||||||| || || || | ||||| || || || || || || || || || Sbjct 40713 TTGGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCGGCCTTCTTATATAT 40768 >seq15962 Length=33107 Score = 206 bits (228), Expect = 3e-48 Identities = 405/597 (68%), Gaps = 9/597 (2%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || ||||| || |||||||| ||| ||| |||||||| || | ||| Sbjct 15383 CTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATAAGCTTC 15442 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || | || || | | | | || | || || ||| || | | | |||||| Sbjct 15443 ACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTAACAGCATTGATAATTATTTCT 15502 Query 93044 ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||||||| | ||||| |||| | | ||| |||| | ||| | |||||| Sbjct 15503 TTTACTCTCTGCTCCCACGGTTTATGTAACAGGTGTTTGAACATCAGGCAGGAAAAGTCA 15562 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAACAG 93162 ||||| || || || | || || || ||||||| || || | ||||| | || Sbjct 15563 CAGTGTAAGCCCTCATCCC-TGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATTAG 15621 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 |||||||||||||||||| |||||||| |||||| ||||||||| || || ||||||| Sbjct 15622 TCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAA 15681 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 ||| ||||| ||| ||| || | | || || | ||||| || Sbjct 15682 GGCGGCAAAGGCCT-------TTCTCCATAGGTGGCCTCTTTGTCCCCAATCCAACGCAA 15734 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||||| || || || ||||| | |||||| | ||||| || || || || || | || Sbjct 15735 GGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAAATGGCATTGAAGAGAAATTC 15794 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 | || | | |||| ||||| || || || | ||| |||||||||||||| | Sbjct 15795 CCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTAT 15854 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || ||||| ||||||||||| || |||||||| | ||||| || || ||||||||||| Sbjct 15855 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATTTGCACTTCTTG 15914 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||||| ||| || | ||||||||| ||||| ||||| |||||||| ||||| Sbjct 15915 GCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTAGCTGCAAAGAAAGC 15971 >seq2418 Length=977819 Score = 116 bits (128), Expect = 4e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 ||||||| || || | ||||| | ||||||||||||||||||||| |||||||| || Sbjct 180846 CTCATTGGAAAACGTGAGCCCTGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGC 180905 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 |||| ||||||||| || || ||||||||||| ||||| || |||| |||||| Sbjct 180906 AAAAGAACCAGAAAAGAAGATTCCTTCCACGGCGGCAAAGGCTACAACACGTTC 180959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | ||| |||||||||||||| | || ||||| ||||||||| Sbjct 181287 ATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 181346 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || || |||||||| | ||||| || || ||||||||||| ||||| ||| || Sbjct 181347 AAGCCATAGAAACAGCGGGCTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCAC 181402 >seq16174 Length=225317 Score = 105 bits (116), Expect = 7e-18 Identities = 318/476 (67%), Gaps = 24/476 (5%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAAC-CTTCGTCTCGTGATATCAAC-TCAT 93137 ||| | || | ||| |||||||| | ||||| | || |||| || || || |||| Sbjct 51271 TTGAATATCAGGCAGGCAAAGTCACAAGGTAAAAACCTCATCTC-TGCTAATAAGATCAT 51329 Query 93138 TGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAAC 93197 || ||||| || ||| |||||||| |||||||||||| |||||| | |||||| Sbjct 51330 TGGAAAATGTGTGGCCAGGTT-CAGTCCTCATTTCTTGAGCCAGAATATTAATGCAAAAG 51388 Query 93198 TACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC---GGCAAAAT 93254 |||| |||| | | | |||||| | |||||| ||||||| || | | || | | Sbjct 51389 AACCATAAAAGATTTT---TTCCACAG-TGCAAAGGCCACAACACATACAGAGGTACTCT 51444 Query 93255 TTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTA 93314 || | | | | ||||| | || ||||||| || || ||| | |||||| | Sbjct 51445 TTTTG----TCC--CCAATCCAATGCAAGTCCCAATCTGCCTTCTTC---ACACAAGGCA 51495 Query 93315 GTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGA 93374 | |||| | || || || || | || || | ||||| ||| |||||| | Sbjct 51496 TT-TTTCT-TGGCATTGAAGAGAAATTCCTTTTCTTTGTAATCT-GTA-GTATGTCAGTA 51551 Query 93375 TTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAAC 93434 | | || |||||||||||||| | || || || | |||||||| || ||| || Sbjct 51552 TGAGATGATTGTACATTTCAGAATGTATGTTTTCTATGGTGATTTGGAAGCCACAGATAC 51611 Query 93435 ATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTA 93494 | | ||||| || || |||||||||||| |||| | || || | |||| | || |||| Sbjct 51612 AGCATGCTTCTGTAATTTGCACTTCTTGACTAAATTTTTCCACCAAATTTCCTTTTACTA 51671 Query 93495 TACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 | | | | ||||||| ||| ||| | ||| |||||||| | |||| ||| Sbjct 51672 TGCTAACACTCACTGCAAAGAAAACCAGAACATGAGATATAAAATATCTCTCCTCA 51727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556713531200680