Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3495 100 2e-16 seq304 100 2e-16 seq1925 89.7 4e-13 seq1696 86.0 5e-12 >seq3495 Length=1667739 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || |||||||| ||| Sbjct 879012 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 878953 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || || || || || || ||||| || || || Sbjct 878952 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCAG 878893 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||||| | || || |||||| Sbjct 878892 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 878833 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 878832 ATCCAGAAAGAATCCACC 878815 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || |||||||| ||| Sbjct 879467 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 879408 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || || || || || || ||||| || || || Sbjct 879407 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCAG 879348 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||||| | || || |||||| Sbjct 879347 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 879288 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 879287 ATCCAGAAAGAATCCACC 879270 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | ||||| || || |||| || |||||||| Sbjct 879701 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAG 879642 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | ||| || || || || || || || ||||| || Sbjct 879641 CCCAGTGACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCT 879582 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| ||||||| | || || Sbjct 879581 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGAC 879522 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 ||||| || || |||||||||||| Sbjct 879521 TACAATATCCAGAAAGAATCCACC 879498 >seq304 Length=872862 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || |||||||| ||| Sbjct 181521 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 181580 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || || || || || || ||||| || || || Sbjct 181581 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCAG 181640 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||||| | || || |||||| Sbjct 181641 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 181700 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 181701 ATCCAGAAAGAATCCACC 181718 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || |||||||| ||| Sbjct 181976 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 182035 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || || || || || || ||||| || || || Sbjct 182036 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCAG 182095 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||||| | || || |||||| Sbjct 182096 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAC 182155 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 182156 ATCCAGAAAGAATCCACC 182173 >seq1925 Length=520723 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || || || |||||||| ||||| | || || || || |||| ||||| || ||| || Sbjct 381285 AAAATACAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACGCTTGAGGTTGAACCC 381344 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| | | || || |||| || || || || ||||| || ||||| | | | Sbjct 381345 TCAGATGCTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCT-GTT 381403 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| || || || | || ||| ||||| | || || ||| Sbjct 381404 CAGCAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGCACTTTGTCAGACTAC 381463 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || |||||| | | | | || ||| || | || || ||| Sbjct 381464 AACATTCAAAAGGAGTCCACCCTTCCTCTTGTGTTGAGACTTCGTGGTGGT 381514 >seq1696 Length=1012329 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || || || || ||| ||||| || || || Sbjct 927070 AAAATGCAGATTTTCGTAAACACCCTTACTGGGAAGACCACCACGCTTGAGGTTGAGCCC 927011 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || |||| || || || || ||||| || ||||| || ||| Sbjct 927010 TCGGATACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCGGAT 926951 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| || || || | || ||| || || | || || ||| Sbjct 926950 CAGCAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTATCAGACTAC 926891 Query 22396 AACATTCAAAAAGAATCCACCATACAT 22422 ||||||||||| || |||||| | ||| Sbjct 926890 AACATTCAAAAGGAGTCCACCCTTCAT 926864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419619772741705