Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15962 127 4e-24 seq15872 125 1e-23 seq2418 84.2 4e-11 seq2406 84.2 4e-11 >seq15962 Length=33107 Score = 127 bits (140), Expect = 4e-24 Identities = 469/729 (64%), Gaps = 22/729 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||| || || ||| |||||||| ||||| || ||| | || | Sbjct 15974 CTCGCTTTCTTTGCAGCTAGTGATGGCATAGTGAATGAAAATTTGGTGGAGCGATTTAGC 15915 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||| ||||| ||| || || ||||| ||||| |||||||| || ||||| || | Sbjct 15914 CAAGAAGTGCAAATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAA 15857 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 || | || ||||| ||||| | || || | |||| ||||| |||||| | Sbjct 15856 ACATACATTCTGAAATGTAC---AGTCTCCTTATTGACACTTACATTAAAGATCCCAAAG 15800 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | | | || ||||| ||||| | || ||||| || | ||||||||||| |||| Sbjct 15799 AAAGGGAATTTCTCTTCAATGCCATTTAAACAATGCCTTGTGTGAAGAAGAAGGCAGACT 15740 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | ||||| | | || || || | || || |||| |||| Sbjct 15739 GGGCCTTGCGTTGGATTGGGGACAAAGAGGCCACCTATGGAGAAAGGC-------CTTTG 15687 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAG 42776 ||||| | || || |||||||| || || | || || || || |||||||||||| | Sbjct 15686 CCGCCTTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAAAC 15627 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 ||| | ||||| || ||||| || || || || || || |||||||| ||||| | Sbjct 15626 GAGGACT-AATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGATGAGGGCTTA 15568 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | |||||| ||||||| ||||| | ||||| || || || | | || || Sbjct 15567 CACTGTGACTTTTCCTGCCTGATGTTC---AAACACCTGTTACATAAACCGTGGGAGCAG 15511 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 | || | || || | | || || ||| || |||||| |||| || || | Sbjct 15510 AGAGTAAAAGAAATAATTATCAATGCTGTTAGGATTGAACAGGAGTCCCTCCCGGAGGCC 15451 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 |||||||| || | |||||||| | | ||| ||||||| ||| || Sbjct 15450 TTGCCCGTGAAGCTTATTGGCATGAATTGCACTTTAATGAAGCAGTACATTGAGTTTGTG 15391 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 || ||| || || || ||||| | ||| | | || | || || Sbjct 15390 GCAGACAGGCTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCAGAGTAGAGAATCCATTT 15331 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 ||||| ||||||||||| || |||| || ||||| ||||| || |||||| | || | | Sbjct 15330 GACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGC 15271 Query 43137 GACTACCAG 43145 || || ||| Sbjct 15270 GAGTATCAG 15262 >seq15872 Length=96178 Score = 125 bits (138), Expect = 1e-23 Identities = 472/730 (65%), Gaps = 18/730 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||| || ||| ||| |||||||| ||||| || ||| | || | Sbjct 40654 CTTGCTTTCTTTGCAGCCAGTGATGGCATAGTGAATGAAAATTTGGTGGAGCGATTTAGC 40595 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||| ||||| ||| || || | ||| ||||| || || || || ||||| || | Sbjct 40594 CAAGAAGTGCAAATTACA--GAAGCCCACTGTTTCTATGGATTACAAATTGCCATGGAAA 40537 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 |||| || ||||| ||||| | || || | |||| ||||| |||||| | Sbjct 40536 ACGTACATTCTGAAATGTAC---AGTCTCCTTATTGACACTTACATTAAAGATCCCAAAG 40480 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | | | | ||||| ||||| | || ||| | || | ||||||||||| |||| Sbjct 40479 AAAGGGAATTTTTCTTCAATGCCATTTAAACAATGTCTTGTGTGAAGAAGAAGGCAGACT 40420 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | ||||| | | || || || | || || ||||| ||||||| Sbjct 40419 GGGCCTTGCGTTGGATTGGGGACAAAGAGGCCACCTATGGAGAAAGGCTAC-AGCCTTTG 40361 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 |||| || || | |||||||| || || | || || || || |||||||||||| | Sbjct 40360 CCGCTGTGGAAGAAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAAAC 40301 Query 42778 -AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 ||| | |||||| || ||||| || || || || || || ||||||| ||||| | Sbjct 40300 GAGGACT-GATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGGTGAGGGCTTA 40242 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | |||||||||||||| ||||| | ||||| || || || | | || || Sbjct 40241 CACTGTGACTTTGCCTGCCTGATGTTC---AAACACCTGCTACATAAACCGTTGGAGCAG 40185 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 | || | | || | | || || ||| || |||||||||||||| || | Sbjct 40184 AGAGTAAAAGAAGTAATTATCAATGCTGTTAGGATTGAACAGGAGTTCCTCACGGAGGCC 40125 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 |||| ||| || | |||||||| | | ||| ||||||| ||| || Sbjct 40124 TTGCCAGTGAAGCTTATTGGCATGAATTGCACTTTAATGAAGCAGTACATTGAGTTTGTG 40065 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGC-CGCCTCTACAACACGCCGTGCCCCTT 43075 || ||| || || || ||||| | ||| | || | || | || || Sbjct 40064 GCAGACAGGCTTATGCTGGAGCTGGGTTTTAGCAAGGCT-TTCAGAGTAGAGAATCCATT 40006 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 ||||| ||||||||||| || |||| || ||||| ||||| || |||||| | || | Sbjct 40005 TGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTAGG 39946 Query 43136 CGACTACCAG 43145 ||| || ||| Sbjct 39945 CGAGTATCAG 39936 >seq2418 Length=977819 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| ||||||| || || |||||||| || || | || || || || |||||| Sbjct 180950 GTAGCCTTTGCCGCCGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 180891 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || || || || |||||||| Sbjct 180890 CTCAAGAAACGAGGACT-GATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGA 180832 Query 42827 CGAGG 42831 |||| Sbjct 180831 TGAGG 180827 >seq2406 Length=770489 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || | |||||||| || | || || | || |||| Sbjct 395125 TGGTGGCCTTTGCTGCTGTAGAAGGAGTTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 395184 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| || ||||| ||||||||||| || || || ||||||||||| Sbjct 395185 GGCTAAAGAAGAGAGGTCTC-ATGCCTGGACTCACCTTTTCCAATGAGCTCATCAGCAGA 395243 Query 42825 GACGA 42829 || || Sbjct 395244 GATGA 395248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944089457694320