Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7191 163 3e-35 seq3663 104 2e-17 >seq7191 Length=127218 Score = 163 bits (180), Expect = 3e-35 Identities = 280/404 (69%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 |||||||| || || | ||| || || ||||||||||| || || | ||| || || Sbjct 41240 AGTGGCTCAATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCACCT 41299 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || || || || | || |||| ||| || || | || | ||||||||||||||| Sbjct 41300 GGCTGCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTG 41359 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 || || || |||| |||||||||||| |||| ||| || ||||| ||||| || || | | Sbjct 41360 AAGGGTACACCCAGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTG 41419 Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410 | | ||||| || || || | || ||||| || ||||||||||| | | || Sbjct 41420 TTCACCACATAGAACTGGCAGAGAGCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATCT 41479 Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 |||||||| |||||||| ||||||||||| || | || || |||| || || Sbjct 41480 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 41539 Query 20471 A-CAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTA 20529 | || | | | || ||||| | || || |||| || || | || | || ||| Sbjct 41540 ATCACTTTTTG-CAGCTGGTCTACTCCTTGACCTGAGTAATCTGAATTCATATCTTTGTA 41598 Query 20530 CGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCA 20573 | || ||||| |||||||||||||| || || || || |||| Sbjct 41599 GTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCA 41642 >seq3663 Length=525456 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | || | ||||||||||||||| || || || |||| |||| Sbjct 215700 TGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCC 215641 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||| |||| ||| || ||||| ||||| || || |||| | ||||| || || Sbjct 215640 ATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCCCCGTTCACCACATAGAACTGG 215581 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400 || | || ||||| || ||||||||||| Sbjct 215580 CAGAGAGCATGGCAGGGAGGCAGCGCCATCAA 215549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441256073445880