Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1696 89.7 5e-13 seq3540 86.0 6e-12 seq1660 86.0 6e-12 seq15872 82.4 8e-11 >seq1696 Length=1012329 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| | |||||| || || ||||| ||||| | | Sbjct 926874 GACTCCTTTTGAATGTTGTAGTCTGATAAAGTACGTCCATCTTCCAGTTGCTTACCAGCA 926933 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || |||||||| || ||||| || || ||| || || | Sbjct 926934 AAGATCAGTCTTTGCTGATCCGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACA 926993 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | ||| ||||| | ||| || || ||||| || || ||| Sbjct 926994 TTTTCTATAGTATCCGAGGGCTCAACCTCAAGCGTGGTGGTCTTCCCAGTAAGGGTGTTT 927053 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 927054 ACGAAAATCTGCAT 927067 >seq3540 Length=97209 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||| || | || | | | |||||||| || ||||||||||| | Sbjct 53857 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 53798 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| || | ||| ||||| || || Sbjct 53797 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 53738 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | ||||||| | | ||||||| Sbjct 53737 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 53678 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || || || |||||||| Sbjct 53677 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 53631 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||| || | || | | | |||||||| || ||||||||||| | Sbjct 54313 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 54254 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| || | ||| ||||| || || Sbjct 54253 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 54194 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | ||||||| | | ||||||| Sbjct 54193 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 54134 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || || || |||||||| Sbjct 54133 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54087 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||| || | || | | | |||||||| || ||||||||||| | Sbjct 55218 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 55159 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| || | ||| ||||| || || Sbjct 55158 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 55099 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | ||||||| | | ||||||| Sbjct 55098 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 55039 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || || || |||||||| Sbjct 55038 TCCA-GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54993 >seq1660 Length=831338 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||| ||||||| || |||||| || Sbjct 181687 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGGTGTAGTCTGACAAAGTACGTCCATC 181628 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||| ||||| | | |||| || | || || |||||||| || ||||| || || Sbjct 181627 TTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCCGGAGGAATTCCTTCCTTATC 181568 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || || | | ||| | || || | || ||||||| ||| | || Sbjct 181567 CTGGATCTTGGCCTTGACATTTTCTATAGTATCCGAGAGTTCAACCTCGAGCGTGATGGT 181508 Query 138582 TTTACCAGTCAGAGTTTTTACA-AAAATCTGCAT 138614 || ||||| || |||||| | ||||||||||| Sbjct 181507 CTTCCCAGTAAGGGTTTTTTTAGAAAATCTGCAT 181474 >seq15872 Length=96178 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 || ||| ||||||| | |||| || |||| || |||| | |||||||| ||| Sbjct 40151 ATTGAACAGGAGTTCCTCACGGAGGCCTTGCCAGTGAAGCTTATTGGCATGAATT-GCAC 40093 Query 52686 TCCA-TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG--GCAG 52742 | | || ||||||| ||||||||||| || | || || || |||| || || Sbjct 40092 TTTAATGAAGCAGTACATTGAGTTTGTGGCAGACAGGCTTATGCTGGAGCTGGGTTTTAG 40033 Query 52743 CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 | ||| |||| | ||||| ||||| || ||| | |||||||| || || || Sbjct 40032 C--AAGGCTTTCAGAGTAGAGAATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGG 39975 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGC 52842 ||||| ||||| || |||||| |||| ||||||||| ||| Sbjct 39974 AAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGC 39935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496131157205040