Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1003 174 2e-38 seq1914 113 7e-20 seq7421 96.9 5e-15 >seq1003 Length=1033224 Score = 174 bits (192), Expect = 2e-38 Identities = 221/304 (73%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||||| | || ||||| || ||||| || || ||||| |||||||| | Sbjct 479069 AACACTGAACGAAGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGA 479010 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || ||||| || |||||||| Sbjct 479009 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCCCCAAAAGTGCTCGGCTTCCAGTATTG 478950 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || ||||||||| ||| |||| || ||||||||||| ||||| || |||| || | Sbjct 478949 AGGAGAGCAGATGGGGTTACCCATAAGGCCTTTCAAGGAGAACGGTGCTCCCATTTCTAC 478890 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| |||| || || || ||| | ||||| || ||||| || | | | ||| ||||| Sbjct 478889 CATGGTCTCCCCAAATATAGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATAGAG 478830 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | ||| || | ||| ||||| |||||||||| ||| ||||| || |||||||| || Sbjct 478829 CTCCATAGCATCAATGTCACCATAAAGGGCTTCCAGCTCTGCAGCCATTTCCTTCTCTCC 478770 Query 9175 TACA 9178 | || Sbjct 478769 TGCA 478766 Score = 165 bits (182), Expect = 1e-35 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || || || ||| |||| ||| |||| || ||||| || ||||| || ||||| || Sbjct 477321 GTAGTCTGGAATAACCGCTCATCATCCCACTCAGGGTGCTCCTGTTTAAGCACATCACAT 477262 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || ||||||||||| | || ||| || ||||| |||||||| | ||| ||||| | |||| Sbjct 477261 ACTCTGTTGTGTTCCCGCAACCAGATTGTGGCATACATCATGAGACCAGGCACCAGACCA 477202 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 || || |||| |||||| ||||| ||||||| || || | | |||| || | ||| Sbjct 477201 AAGACCTCATGCCCCACGGCAAATCGCAGATGCTCAGGGATATGAGGCGGGTAGATCATC 477142 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969 | ||||| || || ||||| ||||||||||||| || || ||||| | |||| Sbjct 477141 TCTACCTGAGTGTCCTTGACTGTGGGGGGATACACCTCTCCATCAATTATCTGA 477088 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||||||||||| | ||||| |||||||| | || ||||| || | ||| ||| Sbjct 475532 TCACCTTTCACCCCCATGGGAGTTGGGCAGTCGTCGGCTACAGGAGGAAGGGCTCTGGTA 475473 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || |||||||| | ||||||||||| | | ||||| Sbjct 475472 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAATTTTTGTAGCCATAGTGTGCATTGTAAGTT 475413 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 475412 GGCGGACTGTCAATCAAATGTGATCTGGCT 475383 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | || || || |||||| | ||| ||| | || Sbjct 476123 TCTTACCCCATGGCCCAGTCCTTTGGTAAAGGCAGGTCCTTGTTTTTGATCTGTCTTGAA 476064 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || ||||||||||| | || || || ||||||| || ||||| || || || Sbjct 476063 AAACTGATGGGTAAAGTGTTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGTGGGTC 476004 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | | |||||| |||| || || | ||||||| || || Sbjct 476003 AGGGATGAACTTTCTTCTTAGGAGAACTTTTTCCAGAACCTCTTTTGAATCAGGAAG 475947 >seq1914 Length=1406372 Score = 113 bits (124), Expect = 7e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || || | || || || || ||||| |||||||||||| Sbjct 1057529 GTGGCTGTGTTAACAATGTTGAAGCCCATCTCACCACCAAATGTGCTTGGTTTCCAGTAC 1057470 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || ||||| ||| | | ||| || || | |||||| ||||| || | ||| Sbjct 1057469 TCGGGAGAACAGATAGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCTCCAATCTCT 1057410 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| |||||||||| ||| | ||||||| || | || || | ||| Sbjct 1057409 ATCATACTCTCCCCGAAGATGGAGTTGGGCAGGCACTTTTCGA-GAAGCAGTCCTGGGTA 1057351 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| | | |||||||| || || ||||||||||| Sbjct 1057350 GAACTCCAAGGCATCAATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCCTTCTC 1057291 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 1057290 TCCTACAAG 1057282 >seq7421 Length=13201 Score = 96.9 bits (106), Expect = 5e-15 Identities = 190/280 (68%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 8896 ACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAA 8955 ||| || ||||| || || ||||| |||||||| | || || || | ||| | || Sbjct 447 ACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTTAAA 388 Query 8956 ACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGC 9015 |||||| || || || || || || |||||||||||| || ||||| ||| || | Sbjct 387 ACCTACTTCTCCTCCAAAAGTACTCGGTTTCCAGTACTGAGGAGAGCATATGGAGTAACC 328 Query 9016 CATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGC 9075 ||| || |||||||||| ||| | || |||| || | ||| |||| | ||||| || Sbjct 327 CATAAGGGCTTTCAAGGAGAACAGTGCTCCCACTTCTACCATGGTCTCCCAAAAGATAGC 268 Query 9076 ACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCC 9135 | | | || || || || | | | | ||| ||||| | ||||| || | || || Sbjct 267 ATCTGAACAAGGCTTATCTATCAGAAGGGCAGGATAGAGCTACACAGCATCAATGT--CC 210 Query 9136 ATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||| |||| ||| || | || || || || ||| Sbjct 209 ATTCAGGGTCTCCAGCTCCGCGGTCATTTCTTTGTCTCCT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723536601083800