Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1568 179 1e-39 seq1696 107 8e-18 seq1925 104 9e-17 seq2795 100 1e-15 seq1660 100 1e-15 seq944 100 1e-15 seq19787 95.1 5e-14 seq15125 89.7 2e-12 seq7371 86.0 2e-11 seq13882 84.2 9e-11 seq13881 84.2 9e-11 seq519 84.2 9e-11 >seq1568 Length=230268 Score = 179 bits (198), Expect = 1e-39 Identities = 444/662 (67%), Gaps = 19/662 (3%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 ||| ||||| || || || || ||||||| |||||| || || || | ||| |||| || Sbjct 55556 AGCCATTGGCATCGACCTAGGCACCACCTATTCATGCGTGGGGGTGTTCCAGCATGGCAA 55497 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----T 451028 || || || || || |||||||| || ||||| || || || | || || | Sbjct 55496 GGTGGAGATCATTGCCAATGACCAGGGCAACCGAACCACCCC--CA--GCTATGTGGCCT 55441 Query 451029 TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCC 451087 | || || ||||| | || | || | || ||||| | | | |||| ||| | Sbjct 55440 TCACAGACACAGAACGGCTCATTGGAGATGCAGCTAAGAACCA-GGTAGCCATGAATCCT 55382 Query 451088 AAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTA 451147 | ||||| || | |||||| |||||| | || ||| | | ||| ||||| | |||| Sbjct 55381 CAGAACACTGTCTTTGATGCCAAACGTCTGATCGGCAGGAAATATAATGATCCTGTTGTA 55322 Query 451148 CAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || ||| | ||| | | ||| | | || | ||| || ||| |||||| | | Sbjct 55321 CAGTCAGATATGAAACTTTGGCCTTTTCAAGTGATTAATGAAGGAGGCAAGCCCAAGGTG 55262 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 | || ||||||||| || | ||| |||| |||||| |||||||| || ||||| Sbjct 55261 CTGGTGTCTTATAAAGGGGAGAAGAAAGCTTTCTATCCTGAGGAAATTTCTTCAATGGTA 55202 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGT 451326 || || || ||||| || || |||||| | | |||| || | | || || |||| || Sbjct 55201 CTAACAAAGATGAAGGAGACTGCAGAAGCTTTT-TTGGGTCACACTGTCACCAATGCTGT 55143 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 ||| ||||| || || ||||||||||| | ||||| || || || || |||||||| Sbjct 55142 AATCACTGTACCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGT 55083 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||| || ||||||| || | || || |||||||| ||||| ||||| | || || Sbjct 55082 GATTGCAGGACTAAATGTGCTGAGGATCATCAATGAACCCACAGCTGCTGCCATTGCCTA 55023 Query 451447 TGGACTAGGAAAATCAAAAGA-AACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 || ||| || ||| || || | |||| | || | | | |||||| | ||| Sbjct 55022 CGGCTTAG----AT-AAAGGAGGTCAGGGAGAACGACATGTCCTCATCTTTGATCTGGGT 54968 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 ||||| || |||| ||| | || | || || ||||| | ||||| || ||||| Sbjct 54967 GGAGGCACATTTGATGTATCTATCCTGACCATAGATGATGGAATTTTTGAGGTGAAGGCC 54908 Query 451565 AC 451566 || Sbjct 54907 AC 54906 >seq1696 Length=1012329 Score = 107 bits (118), Expect = 8e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || || ||||| || || | || ||||| ||||| | || Sbjct 927068 AATGCAGATTTTCGTAAACACCCTTACTGGGAAGACCACCACGCTTGAGGTTGAGCCCTC 927009 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || ||| | | || || || || |||||||||||||||||||| ||||| Sbjct 927008 GGATACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCGGATCA 926949 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || ||||| ||||||||| | ||||| | || || || Sbjct 926948 GCAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTATCAGACTACAA 926889 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 926888 CATTCAAAAGGAGTCCACCCTTCA 926865 >seq1925 Length=520723 Score = 104 bits (114), Expect = 9e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 ||||| || ||||| || ||||| || || || || ||||| |||||| | || ||| Sbjct 381294 ATTTTTGTGAAAACCCTTACTGGGAAGACCATCACGCTTGAGGTTGAACCCTCAGATGCT 381353 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || ||| | | || || || || |||||||||||||||||| ||| ||| ||| | Sbjct 381354 ATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCT-CTGTTCAGCAAAGA 381412 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || || | || || ||||| ||||||||| | |||||| | || || || ||| | Sbjct 381413 CTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGCACTTTGTCAGACTACAACATTCAA 381472 Query 391236 AAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||||| | || |||| | || || ||||| Sbjct 381473 AAGGAGTCCACCCTTCCTCTTGTGTTGAGACT 381504 >seq2795 Length=681713 Score = 100 bits (110), Expect = 1e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | || || || ||||| ||||||||| | || || || ||||| ||||||| Sbjct 627765 ATGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCCCAGCGTCAGGCAACAAAAGATG 627824 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| ||||||||| | ||||| ||||||||||| || || || || || |||||| Sbjct 627825 CTGGAACCATTGCTGGTCTCAATGTGCTTCGAATTATCAACGAGCCAACTGCTGCTGCTA 627884 Query 451440 TAGCATATGG 451449 | || ||||| Sbjct 627885 TTGCTTATGG 627894 >seq1660 Length=831338 Score = 100 bits (110), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391065 AAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCT 391124 ||||| || ||||| || || || || || || |||||| || |||| || ||| | Sbjct 181490 AAAACCCTTACTGGGAAGACCATCACGCTCGAGGTTGAACTCTCGGATACTATAGAAAAT 181549 Query 391125 ATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTC 391184 | || || || || |||||||||||||||||||| ||||| ||| | | || || Sbjct 181550 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCGGATCAGCAAAGACTGATCTTT 181609 Query 391185 TCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCA 391244 | || || ||||| ||||||||| | |||||| | || || | ||| | ||||| | Sbjct 181610 GCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCAGACTACACCATTCAAAAGGAGTCC 181669 Query 391245 ACACTTCACTTAGTATTAAGACT 391267 || ||||| | || || ||||| Sbjct 181670 ACCCTTCATCTTGTGTTGAGACT 181692 >seq944 Length=800573 Score = 100 bits (110), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | ||| | || || || || || || | ||||| |||||| | || Sbjct 497539 ATGCAGATTTTCATGAAAGCCCTTACGGGGAAGACCATCTCGCTTGAGGTTGAACCCTCA 497598 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 ||| || ||| | | || || || || |||||||| ||||||||||||||||| Sbjct 497599 GATGCTATAGAAAATGTCAAGGTCAAGATCCAGGATAAGGACGGAATTCCTCCTGATCAG 497658 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 497659 CAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGATGTACTTTGTCAGACTAGAAC 497718 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| || ||||| | || || ||||| Sbjct 497719 ATTCAAAAGGAGTTCACCCTTCATCTTGTGTTGAGACT 497756 >seq19787 Length=110213 Score = 95.1 bits (104), Expect = 5e-14 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 40643 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 40586 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 40585 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 40526 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 40525 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 40466 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | | Sbjct 40465 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 40406 Query 96287 TAGGG 96291 || || Sbjct 40405 TATGG 40401 >seq15125 Length=584520 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||||||||||||||||||||||||||| ||| | | || || | || || Sbjct 492428 AAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGTAAG 492487 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| ||||||||| | |||||| | || || || || ||||| | || ||||| Sbjct 492488 CAACTGGAAGATGGATGTACTTTGTCAGACTACAACATCCCAAAGGAGTCCACCCTTCAT 492547 Query 391254 TTAGTATTAAGACT 391267 | || ||||||| Sbjct 492548 CTTGTGATAAGACT 492561 >seq7371 Length=60903 Score = 86.0 bits (94), Expect = 2e-11 Identities = 165/242 (68%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 96050 GCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAAGGAT 96109 ||||| | ||||||| |||||| || ||||| || ||| ||| | | || | ||| Sbjct 35076 GCAATCTCAGGCACTAAGGGATCATCTGGATTGGGATCACACAACAGAGAACAGATGGAC 35135 Query 96110 AAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAA 96169 ||||| ||||| ||| ||| |||||| ||| | || |||||| | |||| Sbjct 35136 AAAAGAACTTTGA-AATAGTTAGTGCTGGAAACCACTGTGACCATAGAATATCAAGACAA 35194 Query 96170 ATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGA 96229 || || || | ||||| |||||||||||||| ||| ||||| || ||||| Sbjct 35195 ATGTTGCCATTACTGCTAATGTTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGT 35254 Query 96230 GGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAG 96289 || || | ||||| ||| || ||| |||| || ||||||||||||| |||| Sbjct 35255 GGTTTGAAGGGATAATCTGTTGGGAAATGAATTGTCAAGAAAAATACTCCACCCTGATAG 35314 Query 96290 GG 96291 || Sbjct 35315 GG 35316 >seq13882 Length=40773 Score = 84.2 bits (92), Expect = 9e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 ||| |||||| | | |||||| | || || | || || |||| ||| || | || Sbjct 8257 AGGCAAGCCCAAGGTCCAAGTAGAATACGAAAGGGAGACAAAAAGTTTCTATCAAGGAGG 8316 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT-GGTTCTC 451310 | || ||||||||||| || || ||||| |||| |||| | | | || || | Sbjct 8317 --TGTCTTCTATGGTTCTAACAAAGATGAAGGAAATTGCAGTAGCCTGTCTTGGGAAGAC 8374 Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 | | ||| |||| || || | || || |||||||| || | | || | ||||||| Sbjct 8375 TATTAACTAATGCTGTGATGGCAGTGCCAGCTTATTTGAA-CACTCTCAGTGTCAAGCAA 8433 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAA 451419 | |||||||| | | |||||||||| | ||||| ||| |||||||||| Sbjct 8434 CAAAAGATGCTGAAACTATTGCTGGTCTCAATGTACTTAGAATTATTAA 8482 >seq13881 Length=42046 Score = 84.2 bits (92), Expect = 9e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 ||| |||||| | | |||||| | || || | || || |||| ||| || | || Sbjct 34879 AGGCAAGCCCAAGGTCCAAGTAGAATACGAAAGGGAGACAAAAAGTTTCTATCAAGGAGG 34938 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT-GGTTCTC 451310 | || ||||||||||| || || ||||| |||| |||| | | | || || | Sbjct 34939 --TGTCTTCTATGGTTCTAACAAAGATGAAGGAAATTGCAGTAGCCTGTCTTGGGAAGAC 34996 Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 | | ||| |||| || || | || || |||||||| || | | || | ||||||| Sbjct 34997 TATTAACTAATGCTGTGATGGCAGTGCCAGCTTATTTGAA-CACTCTCAGTGTCAAGCAA 35055 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAA 451419 | |||||||| | | |||||||||| | ||||| ||| |||||||||| Sbjct 35056 CAAAAGATGCTGAAACTATTGCTGGTCTCAATGTACTTAGAATTATTAA 35104 >seq519 Length=684214 Score = 84.2 bits (92), Expect = 9e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| ||||| | ||||||||||| Sbjct 235543 GCCACTAAGGATGCTGGCCAAATATCTGGACTAAATGTGCTTCGGGTGATTAATGAACCC 235484 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| ||||| |||| Sbjct 235483 ACAGCTGCTGCTCTGGCTTATGGGCTAGACAAATCTGAAGA 235443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975182833986956