Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_015323.1 Length=45667 Score E Sequences producing significant alignments: (Bits) Value seq3106 80.6 8e-11 >seq3106 Length=183861 Score = 80.6 bits (88), Expect = 8e-11 Identities = 128/182 (70%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 985 TATGGGAGAATCGCTCCTCGCTCGGGATTGGCTGCAAAGTTCTTTATAGATGTGGGGGCG 1044 ||||| ||| | ||||| || || || ||||||||||| ||| |||||||| || || Sbjct 112050 TATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCT 112109 Query 1045 GGTGTGATAGATGCTGATTATCGCGGTGAAGTGAAGGTGCTCT--TGTTCAATTTTTCGC 1102 ||||| ||||||| |||||| | | ||| || |||| | | ||||||||||| Sbjct 112110 GGTGTCATAGATGAAGATTATAGAG--GAAATGTTGGTGTTATACTGTTCAATTTTGGCA 112167 Query 1103 AACATGCGTTCAACGTTCGGAAGGGAGACCGTATCGCTCAGCTCGTTGTTGAGCGAATCT 1162 || | || | || ||||| || || || ||||||||| || ||| || || | Sbjct 112168 AAGAGAAATTTGAAGTAAAAAAGGGTGATCGAATTGCTCAGCTCATTTGTGAACGGATTT 112227 Query 1163 TT 1164 || Sbjct 112228 TT 112229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145976115835386