Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3495 140 7e-28 seq304 140 7e-28 >seq3495 Length=1667739 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || |||||||| || | ||| || | |||||||| Sbjct 879487 ACCAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGGCCATCTTCC 879546 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 879547 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 879606 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 879607 ATCTTGGCTTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 879663 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | ||||||| Sbjct 879664 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTT 879697 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| || | ||| || | |||||||| Sbjct 879032 ACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 879091 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 879092 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 879151 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 879152 ATCTTGGCTTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 879208 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 879209 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879240 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| || | ||| || | |||||||| Sbjct 878804 ACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 878863 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 878864 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 878923 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 878924 ATCTTGGCTTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 878980 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 878981 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879012 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| || | ||| || | |||||||| Sbjct 879259 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 879318 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 879319 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 879378 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 879379 ATCTTGGCTTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 879435 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 879436 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879467 >seq304 Length=872862 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| || | ||| || | |||||||| Sbjct 181501 ACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 181442 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 181441 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 181382 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 181381 ATCTTGGCTTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 181325 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | ||||||| Sbjct 181324 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTT 181291 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| || | ||| || | |||||||| Sbjct 181957 ACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 181898 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 181897 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 181838 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 181837 ATCTTGGCTTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 181781 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 181780 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181749 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| || | ||| || | |||||||| Sbjct 181729 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 181670 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 181669 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 181610 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 181609 ATCTTGGCTTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 181553 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 181552 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181521 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| || | ||| || | |||||||| Sbjct 182184 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCC 182125 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 182124 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 182065 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 182064 ATCTTGGCTTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 182008 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 182007 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109180848315419