Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15962 302 5e-77 seq15872 297 2e-75 seq3369 268 1e-66 seq606 111 2e-19 seq2406 107 2e-18 seq2418 102 9e-17 >seq15962 Length=33107 Score = 302 bits (334), Expect = 5e-77 Identities = 608/898 (68%), Gaps = 18/898 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668 ||| || ||| ||||||| | ||||||||||||| ||| | || || |||||||| Sbjct 15202 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG---TAGGACTCGACATCACTCCCAT 15258 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||| ||| | ||||| || |||||||| ||||| || || || | || || Sbjct 15259 CCGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTT 15318 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| || ||||||||||| | ||| | | | || | || || | || | | Sbjct 15319 CTCCATGAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCAT 15378 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || || || || ||||| | ||| || ||||| | | |||||||| || || | Sbjct 15379 AAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATAAG 15438 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAA 18907 || || || | || || | || | || ||||| || | || || | ||||| | | Sbjct 15439 CTTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTAACAGCAT-TGATAATTA 15497 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | ||||| | || || | || || ||||| ||||||| || | || Sbjct 15498 TTTCTTTTACTCTCTGCTCCCACGGTTTATGTAACAGGTGTTTGAACATCAGGCAGGAAA 15557 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||| || || || || | ||||| ||||| || | || |||| Sbjct 15558 AGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCA 15617 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | ||||||| ||| || | ||||||||| || ||||| || ||||||||||| || |||| Sbjct 15618 TTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTT 15677 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | | || ||||| || ||||||||||| | || || || | |||||| Sbjct 15678 CCAAGGCGGCAAAGGC-------CTTTCTCCATAGGTGGCCTCTTTGTCCCCAATCCAAC 15730 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || ||||| || |||||||| || ||||| |||||||| | || | ||| || ||| Sbjct 15731 GCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAAATGGCATTGAAGAGAA 15790 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | | || | | |||||||| || | || || | | |||||||||||| |||| Sbjct 15791 ATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAAT 15850 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| || || || || || || || ||||| | |||||||| || || |||| Sbjct 15851 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATTTGCACTT 15910 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | ||||| || |||||||||||||| ||||| ||||||||||||||||| || | Sbjct 15911 CTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTAGCTGCAAAGAAAG 15970 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | | ||||| || || | | | || || | | || | || | | || | Sbjct 15971 CGAGAACATGAGATATGAAGTATCTCTCCTCCGGCTTCAACAGCTCTCAGTGCTGGATGT 16030 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 | || || | ||| || || ||| ||||||| || |||||||| || |||||||| Sbjct 16031 CCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCGGC---CTTATACAT 16085 >seq15872 Length=96178 Score = 297 bits (328), Expect = 2e-75 Identities = 613/901 (68%), Gaps = 16/901 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTC--ATTAGAATTCATTACTCCCATT 18669 ||| || ||| |||||| | ||||||||| | | | | || ||| ||| |||| Sbjct 39877 TTAGAAGTCAGAATCCAAGGTAAAAGAATTTTTGTAGGACTGGA---CATCACTACCATC 39933 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | || || Sbjct 39934 TGCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTC 39993 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| || ||||||||||| | ||| | | || | || || | || | | Sbjct 39994 TCCATGAAGTCAAATGGATTCTCTACTCTGAAAGCCTTGCTAAAACCCAGCTCCAGCATA 40053 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 || || || || ||||| | ||| || ||||| | | |||||||| || || | Sbjct 40054 AGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATAAGC 40113 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908 || || || | || || || || || || ||||| || | || || | ||||| | | Sbjct 40114 TTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAACAGCAT-TGATAATTAC 40172 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||||| | || || | ||| || ||||| ||||||| || ||||| Sbjct 40173 TTCTTTTACTCTCTGCTCCAACGGTTTATGTAGCAGGTGTTTGAACATCAGGCAGGCAAA 40232 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||||| |||| ||||| | || || || | ||||| ||||| || | || ||||| Sbjct 40233 GTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCAT 40292 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 |||||||| ||| || | ||||||||| || ||||| || ||||||||||| || |||| Sbjct 40293 CAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTTCTTC 40352 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || || ||||| || ||| ||||||||||| | || || || | |||||| Sbjct 40353 CACAGCGGCAAAGGC-TGTAGCCTTTCTCCATAGGTGGCCTCTTTGTCCCCAATCCAACG 40411 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || ||||| || |||||||| || ||||| | |||||| | || | ||| | ||| | Sbjct 40412 CAAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAAATGGCATTGA--AGAAA 40469 Query 19209 CATACGC--TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 || | | || | | |||||||| || | || || | | |||||||||||| ||| Sbjct 40470 AATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAA 40529 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || | ||||| || || || || ||||| || ||||| |||||||| || || ||| Sbjct 40530 TGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCTTCTGTAATTTGCACT 40589 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | ||||| || |||||||||||||| ||||| |||||||| |||||||| || Sbjct 40590 TCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTGGCTGCAAAGAAA 40649 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA--TTCCAATCATTAA 19444 || | ||||| || || | | | || || | | || | | | | ||| | | | Sbjct 40650 GCAAGAACATGAGATATGAAGTATCTCTCCTCCG-GCTTCA-GCAGCTCCCAGTGCTGGA 40707 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 | || || || | ||| || || ||| ||||||| || |||||||| || || ||||| | Sbjct 40708 TGTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCGGCCTTCTTATATA 40767 Query 19505 T 19505 | Sbjct 40768 T 40768 >seq3369 Length=196643 Score = 268 bits (296), Expect = 1e-66 Identities = 635/946 (67%), Gaps = 29/946 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668 ||| || ||| ||||||| | ||||||||||||| ||| | || || |||||||| Sbjct 92263 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG---TAGGACTCCACATCACTCCCAT 92207 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| | || | ||||| || |||||| ||||| || || || | || || Sbjct 92206 CCGCTGACACTCACCTACTCTCTT---AAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTT 92150 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| || ||||||||||| | ||| | | | || | || || | || | | Sbjct 92149 CTCCATGAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCAT 92090 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || || || || ||||| | ||| || ||||| | | || ||||| | || || Sbjct 92089 AAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAGTTCATGTCAATAAA 92030 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || || || | || || || || | || ||||| || | || || | ||||| || Sbjct 92029 CTTCACTGGCAAGGCCTCCGTGAGGAGCTCCTGTTCCATCCTAACAGCAT-TGATA--AT 91973 Query 18909 AGATACAACT----CTATCTTCATTAGGAGGGTATAGA--AGATGTTTAAACATCAAACA 18962 ||| || || ||| | | | | ||| || || ||| | ||||||| || Sbjct 91972 ---TACTTCTTTTACTCTCTGC-TCCGACGTTTATGGAGCAGGTGTCTGAACATCAGGCA 91917 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 ||||| ||||| |||| ||||| ||||| | || | ||||| ||||| || | || Sbjct 91916 GGCAAAGTCACAGTGTAAACCCTCATCTCTGATAATAAGCTCATTGGAAAACGTAAGCCC 91857 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 |||||||||| || ||| || | ||||||||| || ||||| || || |||||||| | Sbjct 91856 TGGCATCAGTCTTCGTTTCTTGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGAG 91797 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 ||||| | || ||||| || || | | ||||||||| | || | || ||| Sbjct 91796 TCCTTCCAGGGCGGCAAAGGCTACAACACGTTCTCCATAGGTGGCC-CTTTGCCCCCAAT 91738 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 ||| || |||||||| |||||||| || ||||| ||||||||||| || | ||| || Sbjct 91737 CCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCATTGAA 91678 Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 ||| | | || | | |||||||| || | || || | | |||||||||||| Sbjct 91677 GAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTC 91618 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 ||||| || ||||| || || || || || || | ||||| | ||||||| || || Sbjct 91617 AGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGACTTCTGTAATTTG 91558 Query 19323 TACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 ||||| | ||||| || ||| |||||||||| |||| |||||||| |||||||| Sbjct 91557 CACTTCTTGGCTAAATCGCTCCACCCAATTTTCATTCACTAGGCCATCACTGGCTGCAAA 91498 Query 19383 AAATGCTAATAC--ATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA--TTCCAAT 19438 || || | || ||| || || | | | || || | | || | | | | || Sbjct 91497 GAAAGCGAGAACGGATGAGCTATGAAGTATCTCTCCTCCG-GCTTCA-GCACCTCCCGGG 91440 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | || || || || | ||| || || ||| ||||||| | |||||||| || || | Sbjct 91439 GCTGGATGTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAGGGAAGCCTCGGCCTTCT 91380 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||||||| | ||| ||||| ||| | |||||||| || ||||| Sbjct 91379 TATACATCTGCCAGATATCGTGATCCTCGATAGGAAAGATGACAAA 91334 >seq606 Length=273764 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 2363 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 2304 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| ||||| |||||||| || |||||||| ||||||||||| | | || | Sbjct 2303 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 2244 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | |||| || ||||| || || ||||||| ||| || | ||| || || Sbjct 2243 TCTGTGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 2195 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || ||||| ||||| ||||| || ||| Sbjct 19207 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATACGGTTCAATGGAT 19148 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| |||| || ||||||||||| || || ||||| | |||| | ||| || Sbjct 19147 TCATTATTCCCAAGGATCTGAGCAGTTGAGGCAGTGGGCATTGGGGCAATAAGTAAACTG 19088 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 19087 TTTCTTATACCATA 19074 >seq2406 Length=770489 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||| ||||| || | |||||||| || ||||| || ||| Sbjct 395248 TCATCTCTGCTGATGAGCTCATTGGAAAAGGTGAGTCCAGGCATGAGACCTCTCTTCTTT 395189 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| | |||||||| || ||||| || Sbjct 395188 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGCC 395129 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 395128 ACCACTCTTTCCCC 395115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/131 (76%), Gaps = 5/131 (4%) Strand=Plus/Minus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| | Sbjct 388700 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAAA 388644 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAA-TGTATTCCAATCATTAATATCTTTA 19452 || ||||||| ||| ||||||| | |||| | | ||||| | | | ||| || Sbjct 388643 TGTGAGAGATAAAATATTTCTCATCTG-GTTTAAGTTTGTTCCAGTGAGGGAGATCCTTT 388585 Query 19453 GATAAATCTAC 19463 ||||| || || Sbjct 388584 GATAAGTCAAC 388574 >seq2418 Length=977819 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | ||||| ||||| || | || ||||||||||||| ||| | Sbjct 180827 CCTCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATCAGTCCTCGTTTCT 180886 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 180887 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCGGCAAAGG 180946 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 180947 CTACAACACGTTCTCC 180962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561960143301480