Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq15962 215 6e-51 seq15872 205 1e-47 seq3369 197 2e-45 seq2418 107 2e-18 seq2406 102 1e-16 >seq15962 Length=33107 Score = 215 bits (238), Expect = 6e-51 Identities = 503/749 (67%), Gaps = 25/749 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| ||||| || || |||| |||| || || || || ||||| |||| Sbjct 15247 CATCACTCCCATCCGCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 15305 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | || || || || ||||| || ||||||||||| | || | | | | | ||| | Sbjct 15306 CCAGAGAAATGTTCTCCATGAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAA 15363 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCA 37046 | ||| || |||||| || || ||||| || ||||| | ||||| || || Sbjct 15364 ACCCAGCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCA 15423 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATT 37106 || || ||||| || || || || | || || | || | | ||| || | Sbjct 15424 A--TTCATGCCAATAAGCTTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTA 15481 Query 37107 ACAGCATCTTTAACTATATTAACAATAACT-TCTTCAGTTGGGGGATATTTTAAA--TAT 37163 ||||||| ||| ||| | | | ||| ||| | || ||| | | | | | Sbjct 15482 ACAGCATTGATAATTATTT---CTTTTACTCTCTGCTCCCACGGTTTATGTAACAGGTGT 15538 Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 || |||| | || | ||| ||||| ||||| || ||||| || || || | ||||| Sbjct 15539 TTGAACATCAGGCAGGAAAAGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTG 15598 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 ||||| || | |||||||||| |||| ||| || | ||| ||||||| ||||||||| Sbjct 15599 GAAAACGTGAGCCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAA 15658 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 ||||||||||| || ||||| | || ||||| || | | | | || || Sbjct 15659 CCAGAAAAGAAGATTCCTTCCAAGGCGGCAAAGGCC--------TTTCTCCATAGGTGGC 15710 Query 37344 CTATAA-TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 || | || |||||| | ||| |||||||| || ||||| ||||| Sbjct 15711 CTCTTTGTCCCCAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGT 15770 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 || ||| || || |||||||| | |||||| |||| | || ||||| ||||| || Sbjct 15771 TTAAATGGCATTGAAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAG 15830 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||| ||||||||||| || || ||||| || || || || || ||||| ||||| | Sbjct 15831 GAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCG 15890 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | | ||| || || | ||| | || | || |||||||| ||||| || Sbjct 15891 GGCTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCC 15950 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACAT 37611 ||||||||||||||||||||| ||||||| Sbjct 15951 ATCACTAGCTGCAAAGAAAGCGAGAACAT 15979 >seq15872 Length=96178 Score = 205 bits (226), Expect = 1e-47 Identities = 504/749 (67%), Gaps = 19/749 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||| |||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 39921 CATCACTACCATCTGCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 39979 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG---TACTAC 36987 | || || || || ||||| || ||||||||||| | || | | | || | ||| Sbjct 39980 CCAGAGAAATGTTCTCCATGAAGTCAAATGGATTC--TCTACTCTGAA-AGCCTTGCTAA 40036 Query 36988 ATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTC 37045 | | ||| || |||||| || || ||||| || ||||| | ||||| || | Sbjct 40037 AACCCAGCTCCAGCATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGC 40096 Query 37046 ATAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTA 37104 | || || ||||| || || ||||| | || || ||| ||| | | || | || Sbjct 40097 AA--TTCATGCCAATAAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTT-CAATCC 40153 Query 37105 TTACAGCATCTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATAT 37163 | ||||||| ||| || | | | | || || || || || | | | | Sbjct 40154 TAACAGCATTGATAATTACTTCTTTTACTCTCTGCTCCAAC-GGTTTATGTAGCAGGTGT 40212 Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 || |||| | || ||||| ||||| ||||| || ||| | || || || | ||||| Sbjct 40213 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTG 40272 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 ||||| || | |||||||| | |||| ||| || | ||| ||||||| ||||||||| Sbjct 40273 GAAAACGTGAGCCCTGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAA 40332 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 ||||||||||| || |||| || || ||||| ||| | | | | | | || || Sbjct 40333 CCAGAAAAGAAGATTTCTTCCACAGCGGCAAAGGCTGTAG--CCTTTCTCCATAGGTGGC 40390 Query 37344 CTATAA-TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 || | || |||||| | ||| |||||||| || ||||| ||||| Sbjct 40391 CTCTTTGTCCCCAATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGT 40450 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 || ||| || || |||| ||| | |||||| |||| | || ||||| ||||| || Sbjct 40451 TTAAATGGCATTGAAGAAAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAG 40510 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||| ||||||||||| || | ||||| || || || || || ||||| ||||| Sbjct 40511 GAGACTGTACATTTCAGAATGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTG 40570 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | | ||| || || | ||| | || | || |||||||| ||||| || Sbjct 40571 GGCTTCTGTAATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCC 40630 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACAT 37611 |||||| |||||||||||||||||||||| Sbjct 40631 ATCACTGGCTGCAAAGAAAGCAAGAACAT 40659 >seq3369 Length=196643 Score = 197 bits (218), Expect = 2e-45 Identities = 305/434 (70%), Gaps = 1/434 (0%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| ||||| |||||||| |||||||| | || | ||||| ||||| || | Sbjct 91918 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGATAATAAGCTCATTGGAAAACGTAAGC 91859 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 |||||||| | | || ||| || | ||| ||||||| |||||||| || |||||||| Sbjct 91858 CCTGGCATCAGTCTTCGTTTCTTGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAG 91799 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 | ||||| | || ||||| ||||||| |||| || | || | || | | || Sbjct 91798 AGTCCTTCCAGGGCGGCAAAGGCTACAACACGTTCTCCATAGGTGGCCCTTTGCCCCCAA 91739 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 |||| | |||||||||||| || ||||| ||||| ||||| || || Sbjct 91738 -TCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCATTG 91680 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 |||||||| | |||||| |||| | || ||||| ||||| || | ||| |||||| Sbjct 91679 AAGAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATT 91620 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 ||||| || || ||||| || || || || || ||| | ||||| | |||| | | | Sbjct 91619 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGACTTCTGTAATT 91560 Query 37536 TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCA 37595 || || || | ||| | || | | |||||||| |||| |||||||| |||||| Sbjct 91559 TGCACTTCTTGGCTAAATCGCTCCACCCAATTTTCATTCACTAGGCCATCACTGGCTGCA 91500 Query 37596 AAGAAAGCAAGAAC 37609 |||||||| ||||| Sbjct 91499 AAGAAAGCGAGAAC 91486 >seq2418 Length=977819 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||| || || || | ||||| ||||| || | |||||||| | |||| ||| || Sbjct 180829 TCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGGCATCAGTCCTCGTTTCTTG 180888 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || ||||| || || ||||| ||| Sbjct 180889 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCGGCAAAGGCT 180948 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 180949 ACAACACGT 180957 >seq2406 Length=770489 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | ||||| |||||||| | ||| ||||| | |||||| || | Sbjct 395250 CTTCATCTCTGCTGATGAGCTCATTGGAAAAGGTGAGTCCAGGCATGAGACCTCTCTTCT 395191 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || ||||| | Sbjct 395190 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 395131 Query 37318 CTAC 37321 | || Sbjct 395130 CCAC 395127 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | ||||||||||| ||||| |||||||||||||| ||||||| ||| || || Sbjct 389336 ATCTCTGATATAAGTATCTATTAGCAAACTATACATTTCTGAGTGAACATTCTCGATGAG 389277 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTC 37528 || ||||| ||||| ||||| | ||| || Sbjct 389276 AATTTGAAAGCCATAGAAACAGCGAGCCTC 389247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592160154418280