Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7191 370 9e-98 seq3663 107 2e-18 seq1357 91.5 1e-13 >seq7191 Length=127218 Score = 370 bits (410), Expect = 9e-98 Identities = 459/624 (74%), Gaps = 7/624 (1%) Strand=Plus/Plus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 |||||||| ||| || || | || ||||| || ||||| || || | ||||| |||||| Sbjct 41204 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGGGTTTTCAGTGGCTCAATGTGATTCAGGTA 41262 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 | || || ||||||| || || ||||| || || || | || || |||| ||| || Sbjct 41263 AATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCTGTGATGTGTGC 41322 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 |||||||| ||||| |||| |||||||| ||||| |||||||| || || |||||||| Sbjct 41323 AATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCCATGTC 41382 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005 || |||| |||||| ||||| || || || |||| || ||| || ||||| || | Sbjct 41383 TCCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACCACATAGAACTGGCAGAG 41442 Query 30006 GGTGTGGCACGGAGGAAGAGCCATGA--GGCCCAAG-TCTTTGGGGTTCCAGGCGCACAC 30062 | ||||| ||||| || ||||| | || ||| ||||| ||||||||||| |||| Sbjct 41443 AGCATGGCAGGGAGGCAGCGCCATCAAAGG---AAGATCTTTTGGGTTCCAGGCACACAT 41499 Query 30063 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 30122 |||||| | ||||| || |||||| | ||||| ||| | | ||||||||||| || Sbjct 41500 GATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTC 41559 Query 30123 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30182 || || || ||||| |||| |||| || |||| |||||||| ||||||||||| Sbjct 41560 TACTCCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAATGCCTCCA 41619 Query 30183 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30242 |||||| || || || || ||||||||||| |||| | | || ||| |||| Sbjct 41620 CTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTC 41679 Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302 ||||||||||| ||| || ||||| |||||||| || || ||||| || || || || Sbjct 41680 CAAAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCCTT 41739 Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30362 | |||||||| || ||| ||||||||||||||||||| || ||||||| || || Sbjct 41740 AGCATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTCCAGAATAC 41799 Query 30363 CCTCTTGGTCGTGAGGAGGGGAAA 30386 | ||||| | || || ||||| Sbjct 41800 ACGTTTGGTTATAAGCAGAGGAAA 41823 >seq3663 Length=525456 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || |||| |||||||| ||||||||||||||||| || || || || ||||||| Sbjct 211971 TCATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGT 211912 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||| |||| | | || ||| |||||| |||||||| ||| || ||||| | Sbjct 211911 CTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCAT 211852 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||| || || ||||| || || || || | |||||||| || Sbjct 211851 CCCAGATTTTCACTCCCTTGGAAGACAGTTCCTTAGCATTTGTGGATCC 211803 >seq1357 Length=219996 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || |||||| | | ||||| |||||| || || Sbjct 173731 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 173790 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||||||||||| || |||||||| ||||||| ||||| || ||| Sbjct 173791 ATGGAGAACCAAGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 173838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408512237568761