Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq3106 98.7 3e-16 seq3277 95.1 3e-15 seq9485 93.3 1e-14 >seq3106 Length=183861 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 112036 TTCCTTCTGGGTGCTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 112095 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || ||||||||| | | | Sbjct 112096 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTATACTGT 112155 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 | |||||| || | || ||| | | || |||||| | ||||||||| | |||| Sbjct 112156 TCAATTTTGGCAAAGAGAAATTTGAAGTAAAAAAGGGTGATCGAATTGCTCAGCTCATTT 112215 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGG 1197 ||||| | | ||| |||| || || ||| | || || ||| | ||||||| Sbjct 112216 GTGAACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGTGTTGGATGATACTGAAAGGG 112275 Query 1198 GTTCTGCAGGATTTGGGTCTACCGGAA 1224 |||| | ||| ||||| || || |||| Sbjct 112276 GTTCAGGAGGTTTTGGATCCACTGGAA 112302 >seq3277 Length=962756 Score = 95.1 bits (104), Expect = 3e-15 Identities = 181/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || || | || || || | | Sbjct 76593 TTCCTTCTGGGTGCTATGGAAGAGTAGCTCCACGTTCTGGTTCGGCTGCAAAACACTTCA 76534 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | || | || ||||||||| | | Sbjct 76533 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTACAGAAGAAATGTTGGTGTTACAGTGT 76474 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || |||| | | || |||||| | ||||||||| | |||| Sbjct 76473 TTAATTTTGGCAAAGAGAATTTTGAAGTAAAAAAGGGTGATTGAATTGCTCAGCTCATTT 76414 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGG 1197 ||||| || | ||| |||| || || ||| | || || ||| | ||||||| Sbjct 76413 GTGAACAGATTTTTTATCCAGAAATAGAAGAAGTTCAAGTGTTGGATGATACTGAAAGGG 76354 Query 1198 GTTCTGCAGGATTTGGGTCTACCGGAA 1224 |||| | ||| ||||| || || |||| Sbjct 76353 GTTCAGGAGGTTTTGGTTCCACTGGAA 76327 >seq9485 Length=81507 Score = 93.3 bits (102), Expect = 1e-14 Identities = 187/273 (68%), Gaps = 11/273 (4%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| ||||||| | || || || || || || | | Sbjct 710 TTCCTTCTGGGTGCTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTCA 769 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| | || ||||||||| | | | Sbjct 770 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAAGAAATGTTGGTGTTATACTGT 829 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || ||| | | || |||||| |||||||| | |||| Sbjct 830 TTAATTTTGGCAAAGAGAAATTTAAAGTAAAAAAGGGTGATCCAATTGCTCAACTCATTT 889 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTCC----TTAGAGGATTCGG 1191 ||||| || | ||||| ||||| |||||| || ||| || || ||| | | Sbjct 890 GTGAAC-GGATTTTTTT--ATCCAG--AAATAGAAGAAGTTCAAGTGTTGGATGATACTG 944 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 |||||||||| | ||| ||||| || || |||| Sbjct 945 AAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAA 977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138646757721492