Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1696 91.5 1e-13 seq3540 82.4 6e-11 >seq1696 Length=1012329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||| | | ||| || ||| ||| |||||||| ||||| || |||| | | || | || Sbjct 926855 CAACCCAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCTGATAAAGTACGTCCATC 926914 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||||| ||||| ||||||| || ||||||| |||| || ||||| || Sbjct 926915 TTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCCGGAGGAATTCCTTCCTTATC 926974 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | || || || | ||| ||||| | ||| | || Sbjct 926975 CTGGATCTTGGCCTTGACATTTTCTATAGTATCCGAGGGCTCAACCTCAAGCGTGGTGGT 927034 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | || ||||| ||||||||||| Sbjct 927035 CTTCCCAGTAAGGGTGTTTACGAAAATCTGCAT 927067 >seq3540 Length=97209 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| ||||| || | ||| ||| || || || ||||| ||||| Sbjct 54313 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 54254 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 54253 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 54194 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| |||||| || ||| | | | || | ||||||| Sbjct 54193 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 54134 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || || || |||| || || || || ||||||||| Sbjct 54133 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 54086 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| ||||| || | ||| ||| || || || ||||| ||||| Sbjct 54766 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 54707 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 54706 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 54647 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| |||||| || ||| | | | || | ||||||| Sbjct 54646 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 54587 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || || || |||| || || || || ||||||||| Sbjct 54586 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 54539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380839374882711