Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq511 181 2e-40 seq15872 176 8e-39 seq15962 161 2e-34 seq821 132 9e-26 seq3630 98.7 2e-15 seq606 86.0 1e-11 >seq511 Length=1888570 Score = 181 bits (200), Expect = 2e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| |||||||| || Sbjct 106823 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACTTGC 106764 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || ||| |||||| | ||||| || ||||| || | |||||| |||||| Sbjct 106763 TCCCGGAGGACGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 106704 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 106703 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 106644 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| ||||| || ||||| | ||| || Sbjct 106643 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGATCTTCCATATTGATGGGG 106584 Query 241625 GAC 241627 ||| Sbjct 106583 GAC 106581 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| |||||||| | ||||| || ||| |||||| | ||||| ||||||| Sbjct 106786 TCTGTTTGAGCTGGGCCACTTGCTCCCGGAGGACGCCGGCGGTACTCGACAGCCCCGCGT 106727 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||||| | || |||||||| ||||||||||| |||||||| Sbjct 106726 TCTCGGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 106672 >seq15872 Length=96178 Score = 176 bits (194), Expect = 8e-39 Identities = 548/832 (66%), Gaps = 30/832 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| |||||||| |||| || |||||||| Sbjct 39936 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTCTC 39995 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||||||| || || || | | | | | | || || | | |||| || ||||| Sbjct 39996 CATGAAGTCAAATGGATTC--TCTACTCTGAAAGCCTTGCTAAAACCCAGCT---CCAGC 40050 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || || |||| ||||| | ||| | ||| |||||||| || Sbjct 40051 ATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATA 40110 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| ||||| |||| ||||| ||||||| || ||| || || | | | Sbjct 40111 AGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGTTCAATCCTAACAGCATTG---ATA 40167 Query 48074 AT--CTGCTTA-ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATG 48130 || || ||| || | ||| | ||||| | ||||||| ||| | | || | Sbjct 40168 ATTACTTCTTTTACTCTCTGCTCCAACGGTTTATGTAGCAGGTGTTTGA---ACATCAGG 40224 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| | ||| ||||| || ||| ||| || ||| | ||||| || ||| Sbjct 40225 CAGGCAAAGTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAAAACGTGAGC 40284 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | | ||||||||||| |||| || ||||| ||||| |||||| Sbjct 40285 CCTGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAG 40344 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || | ||||| || || || || || ||||| ||||| | | || | ||||| Sbjct 40345 ATTTCTTCCACAGCGGCAAAGGCTGT-AGCCTTTCTCCATAGGTGGCCTCTTTGTCCCCA 40403 Query 48311 ATCC-AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||| | | ||| |||||||||||||||||||| | || | ||| || | ||||| Sbjct 40404 ATCCAACGCAAG-GCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAAATGGCATT 40462 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTA 48426 ||||| | | || | || || || || | | || || | ||| Sbjct 40463 GAAGAAAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACT---GTA 40519 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 ||| ||||| || || || || || || || || || || ||||| ||| || Sbjct 40520 CATTTCAGAATGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCTTCTGT 40579 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 | ||||||||| | |||| ||||| || ||| ||||| ||||| ||||| || Sbjct 40580 AATTTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTGGC 40639 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG-AGCATTCC 48605 |||||||| ||||| ||||| | ||| | | ||| | | | || ||| | || Sbjct 40640 TGCAAAGAAAGCAAGAACATGAGATATGAAGTATCTCTCCTCCGGCTTCAGCAGC-TCCC 40698 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || ||| | ||| ||| || ||||| || || | ||||||||||| || Sbjct 40699 AGTGCTGGATGTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAAGC 40750 >seq15962 Length=33107 Score = 161 bits (178), Expect = 2e-34 Identities = 484/738 (66%), Gaps = 28/738 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| |||||||| |||| || |||||||| Sbjct 15262 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGAAATGTTCTC 15321 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||||||| || || || | | | | | | || || | | |||| || ||||| Sbjct 15322 CATGAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCCAGCT---CCAGC 15376 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || || |||| ||||| | ||| | ||| |||||||| || Sbjct 15377 ATAAGCCTGTCTGCCACAAACTCAATGTACTGCTTCATTAAAGTGCAATTCATGCCAATA 15436 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||||||||| |||| | ||| |||||| || ||| || || | | Sbjct 15437 AGCTTCACGGGCAAGGCCTCCGGGAGGGACTCCTGTTCAATCCTAACAGCATTGATAATT 15496 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | || || | ||| | ||||| | |||||| ||| | | || |||| Sbjct 15497 ATTTCTTTTACTCTCTGCTCCCACGGTTTATGTAACAGGTGTTTGA---ACATCAGGCAG 15553 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 | |||||| | ||| ||||| || |||| ||| || ||| | ||||| || ||| || Sbjct 15554 GAAAAGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCT 15613 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | ||||||||||| |||| || ||||| ||||| |||||||| Sbjct 15614 GGCATTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATT 15673 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || |||| || || || |||| ||||| | | || | ||||| ||| Sbjct 15674 CCTTCCAAGGCGGCAAA-------GGCCTTTCTCCATAGGTGGCCTCTTTGTCCCCAATC 15726 Query 48314 C-AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 | | | ||| |||||||||||||||||||| | || ||||| || | ||||| ||| Sbjct 15727 CAACGCAAG-GCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAAATGGCATTGAA 15785 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 ||| | | || | || || || || | | || || | |||||| Sbjct 15786 GAGAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACT---GTACAT 15842 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||||| || | || || || || || ||||| || ||||| | ||| || | Sbjct 15843 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 15902 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||||||||| | |||| ||||| || ||| ||||| ||||| ||||| ||| || Sbjct 15903 TTGCACTTCTTGGCTAAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTAGCTGC 15962 Query 48550 AAAGAAGGCAAGGACATG 48567 |||||| || || ||||| Sbjct 15963 AAAGAAAGCGAGAACATG 15980 >seq821 Length=328784 Score = 132 bits (146), Expect = 9e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 43422 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 43481 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||||||||||| |||| |||||| ||||| Sbjct 43482 TCGGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCCAAGCGCGAGATGCGCTCCAGC 43541 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||| ||||||||||| || || | ||||||||| || | || || ||||| ||| Sbjct 43542 TTACGCTTGCGGCATTTGGACGCGGCGATGCGGTTCCGCAGCCGTTTGCGCTCCGCTTTG 43601 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || || || || ||||||||||| || ||| Sbjct 43602 ATACGCTCTTGCGTGTCCATGTCGATAGGCGAC 43634 >seq3630 Length=21725 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | |||||||||| ||| Sbjct 5078 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCATTTGGAGGCG 5137 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 5138 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 5197 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 5198 ATGGGGGAC 5206 >seq606 Length=273764 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || ||||| |||||||||||| ||| || |||||||| || ||| Sbjct 40633 GTATACTCTACTATTTCTGTGCATAGGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGG 40692 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | ||| ||||| |||||||||||||| |||| || |||||| ||| Sbjct 40693 -TTGCTCTTCCGATTGCAGGAATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTG 40751 Query 213647 GGAC 213650 ||| Sbjct 40752 AGAC 40755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931286444506880