Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq15872 150 3e-31 seq3369 150 3e-31 seq15962 118 2e-21 seq2406 89.7 1e-12 seq2418 87.8 3e-12 >seq15872 Length=96178 Score = 150 bits (166), Expect = 3e-31 Identities = 481/736 (65%), Gaps = 38/736 (5%) Strand=Plus/Minus Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || |||||||||||| |||||| |||||||| || ||| || ||| |||| | | Sbjct 40651 GCTTTCTTTGCAGCCAGTGATGGCATAGTGAATGAAAATTTGGTGGAGCGATTTAGCCAA 40592 Query 25663 GAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATG 25720 |||||||| ||| || ||| | |||||||| || || || || ||||| ||||| | Sbjct 40591 GAAGTGCAAATTACA--GAAGCCCACTGTTTCTATGGATTACAAATTGCCATGGAAAACG 40534 Query 25721 TGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGA 25777 | || ||||| |||| || || || || || ||||||| ||| | || | Sbjct 40533 TACATTCTGAAATGTA---CAGTCTCCTTATTGACACTTACATTAAAGATCCCAAAGAAA 40477 Query 25778 GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGG 25837 | || | || |||||| | || | | | |||| |||||| |||| Sbjct 40476 GGGAATTTTTCTTCAATGCCATTTAAACAATGTCTTGTGTGAAGAAGAAGGCAGACTGGG 40417 Query 25838 CCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 || || ||||| ||| |||| || || | ||| || |||| |||||||| Sbjct 40416 CCTTGCGTTGGATTGGGGACAA--AGAG-GCCACCTATGGAGAAAGGCTAC-AGCCTTTG 40361 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 | |||||||| | ||||| || ||||| ||||| | || |||||||||||| | | Sbjct 40360 CCGCTGTGGAAGAAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAA-A 40302 Query 25955 AGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 | |||| ||||| ||||| |||||||| ||||| || ||||||| ||||| | Sbjct 40301 CGAGGACTGATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGGTGAGGGCTTA 40242 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 ||| | || |||||||||||| | | || ||| |||| || ||||| | | || Sbjct 40241 CACTGTGACTTTGCCTGCCTGATGTTCA---AACACCTGCTACATAAACCGTTGGAGCAG 40185 Query 26074 ACCGTCTA--CAGT-ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 | || | ||| || |||| | ||||| ||| || ||||||| | Sbjct 40184 AGAGTAAAAGAAGTAATTATCA---ATGCTGTTAGGATTGAACAGGAGTTCCTCACGGAG 40128 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190 | |||||||| || | |||| || |||||||||| | Sbjct 40127 GCCTTGCCAGTGAAGCTTATTGGCATGAATTGCACTTTAATGAAGCAGTACATTGAGTTT 40068 Query 26191 GTGGCCGAC---CATCTGCTGTGCCAGCTGGG-ACTCGCCAGACTCT-ACAGTACGCCTA 26245 ||||| ||| | | ||||| ||||||| | || || || | | |||| | Sbjct 40067 GTGGCAGACAGGCTTATGCTG---GAGCTGGGTTTTAGCAAGGCTTTCAGAGTA--GAGA 40013 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 | || || ||||| ||||| ||||| || ||||||||||||| ||||||||||| |||| Sbjct 40012 ATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGAAGA 39953 Query 26306 GGGTCGGCGACTATCA 26321 | || ||||| ||||| Sbjct 39952 GAGTAGGCGAGTATCA 39937 >seq3369 Length=196643 Score = 150 bits (166), Expect = 3e-31 Identities = 403/602 (67%), Gaps = 28/602 (5%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| | || |||||| || || ||| | ||| Sbjct 91361 GATATCTGGCAGATGTATAAGAAGGCCGAGGCTTCCCTCTGGACAGCTGAGGAGGTGGAT 91420 Query 25534 CTGGCCAAGGACATGGA----CGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTT-- 25587 || |||||||||| | ||| ||| ||| | || || ||| | | | Sbjct 91421 CTTTCCAAGGACATCCAGCCCCGGGAGGT--GCTGAAGCCGGAGGAGAGATACTTCATAG 91478 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 |||| | ||| | || |||||||||||| |||||| ||||||| || ||| | Sbjct 91479 CTCA--TCCGTTCTCGCTTTCTTTGCAGCCAGTGATGGCCTAGTGAATGAAAATTGGGTG 91536 Query 25648 GAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGA 25705 ||| |||| | | |||||||| ||| || | | ||||||| || ||||| | Sbjct 91537 GAGCGATTTAGCCAAGAAGTGCAAATTACA--GAAGTCCGCTGTTTCTGTGGCTTCCAAA 91594 Query 25706 TGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTA 25762 | ||||| ||||| | || ||||| |||| || || || || || ||||||| Sbjct 91595 TTGCCATGGAAAACATACATTCTGAAATGTA---CAGTCTCCTTATTGACACTTACATTA 91651 Query 25763 CAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGA 25822 ||| | || || || || || |||||| ||| || || | | |||| Sbjct 91652 AAGATCCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACAATGCCTTGTGTGAAGA 91711 Query 25823 GGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGC 25882 |||||| |||||| || ||||| || | || || || | ||| || || Sbjct 91712 AGAAGGCAGATTGGGCCTTGCGTTGGATTGGGGGCAA-AGGGCCACCTATGGAGAACGTG 91770 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 | ||||||||||| || |||| || |||| || |||||| |||||| | || |||| Sbjct 91771 TTGTAGCCTTTGCCGCCCTGGAAGGACTCTTCTTTTCCGGTTCTTTTGCGTCAATATTCT 91830 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAG 26000 |||||||| | | | ||| ||||| ||||| ||| |||||||| ||||| || | ||| Sbjct 91831 GGCTCAAG-AAACGAAGACTGATGCCAGGGCT-TACGTTTTCCAATGAGCTTATTATCAG 91888 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA 26060 || |||||| | ||| | || |||||||||||| | | || | ||| ||||||| || Sbjct 91889 AGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCA---GACACCTGCTCCATAA 91945 Query 26061 AC 26062 || Sbjct 91946 AC 91947 >seq15962 Length=33107 Score = 118 bits (130), Expect = 2e-21 Identities = 469/733 (64%), Gaps = 38/733 (5%) Strand=Plus/Minus Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || ||||||||||| |||||| |||||||| || ||| || ||| |||| | | Sbjct 15971 GCTTTCTTTGCAGCTAGTGATGGCATAGTGAATGAAAATTTGGTGGAGCGATTTAGCCAA 15912 Query 25663 GAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATG 25720 |||||||| ||| || ||| |||||||| || ||||| || ||||| ||||| Sbjct 15911 GAAGTGCAAATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACA 15854 Query 25721 TGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGA 25777 | || ||||| |||| || || || || || ||||||| ||| | || | Sbjct 15853 TACATTCTGAAATGTA---CAGTCTCCTTATTGACACTTACATTAAAGATCCCAAAGAAA 15797 Query 25778 GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGG 25837 | || || || |||||| | || || | | |||| |||||| |||| Sbjct 15796 GGGAATTTCTCTTCAATGCCATTTAAACAATGCCTTGTGTGAAGAAGAAGGCAGACTGGG 15737 Query 25838 CCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 || || ||||| ||| |||| || || | ||| || ||| ||||| Sbjct 15736 CCTTGCGTTGGATTGGGGACAA--AGAG-GCCACCTATGGAGAAAGGC-------CTTTG 15687 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 | || |||| || ||||| || ||||| ||||| | || |||||||||||| | | Sbjct 15686 CCGCCTTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAG-AAA 15628 Query 25955 AGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 | |||| ||||| ||||| |||||||| ||||| || |||||||| ||||| | Sbjct 15627 CGAGGACTAATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGATGAGGGCTTA 15568 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 ||| | || ||| |||||||| | | || ||| || | || ||||| | | || Sbjct 15567 CACTGTGACTTTTCCTGCCTGATGTTCA---AACACCTGTTACATAAACCGTGGGAGCAG 15511 Query 26074 ACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 | || | || || | | ||||| ||| || |||||| | Sbjct 15510 AGAGTAAAAGAAATAATTATCAATGCTGTTAGGATTGAACAGGAGTCCCTCCCGGAGGCC 15451 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | |||||||| || | |||| || |||||||||| |||| Sbjct 15450 TTGCCCGTGAAGCTTATTGGCATGAATTGCACTTTAATGAAGCAGTACATTGAGTTTGTG 15391 Query 26194 GCCGAC---CATCTGCTGTGCCAGCTGGG-ACTCGCCAGACTCT-ACAGTACGCCTAACC 26248 || ||| | | ||||| ||||||| | || || | | | |||| || | Sbjct 15390 GCAGACAGGCTTATGCTG---GAGCTGGGTTTTAGCAAGGTTTTCAGAGTA--GAGAATC 15336 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | || ||||| ||||| ||||| || ||||||||||||| ||||||||||| ||||| | Sbjct 15335 CATTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAG 15276 Query 26309 TCGGCGACTATCA 26321 | ||||| ||||| Sbjct 15275 TAGGCGAGTATCA 15263 >seq2406 Length=770489 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| |||||||||||||| || || | || ||| || || ||||| || || |||| Sbjct 395125 TGGTGGCCTTTGCTGCTGTAGAAGGAGTTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 395184 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||| || || ||||||||| |||||||||||||| | Sbjct 395185 GGCTAAAGAAGAGAGGTCTCATGCCTGGACTCACCTTTTCCAATGAGCTCATCAGCAGAG 395244 Query 26003 ACGA 26006 | || Sbjct 395245 ATGA 395248 >seq2418 Length=977819 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 ||||||||||| || ||||| || ||||| || ||||| ||||| | || |||||| Sbjct 180950 GTAGCCTTTGCCGCCGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 180891 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| ||||| |||||||| ||||| || |||||||| Sbjct 180890 CTCAAG-AAACGAGGACTGATGCCAGGGCTCACGTTTTCCAATGAGCTTATTAGCAGGGA 180832 Query 26004 CGAGG 26008 |||| Sbjct 180831 TGAGG 180827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928599155382080