Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2024 255 7e-63 seq1040 109 6e-19 seq2891 89.7 6e-13 >seq2024 Length=170185 Score = 255 bits (282), Expect = 7e-63 Identities = 652/989 (66%), Gaps = 19/989 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| || | ||| | ||| ||||| ||| || ||||| || Sbjct 94249 CAGATGCTCATCCAAACACTGAATGGCAACGGGGTCCACGTCCATGTCAAACTTATTGGC 94308 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | || || || | | ||||||| || ||| || | || || ||||| || Sbjct 94309 AAAAAAGTGATGC---TTGCGCAACATCCAGTTCAAGTCACCAGCTCCAAAAACGCACAC 94365 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | || || |||||||| || ||||| | || || || | | |||||| || Sbjct 94366 TGAGCGCACATGGACCCCGTTGCAGGGTGGGTAAGGGGCACCCTTGGAAATGTCACCCTC 94425 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||| || | || | |||||| || |||||| || | Sbjct 94426 AAAGTACTGCCACTTGACAAACCGAGCGACTGCATTCATGTCAGACAAGTCGTACTTATG 94485 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || ||| | || || | || | ||||||||| | || || Sbjct 94486 GTTCACGGACAGTGAGCCCGGGACGTCAGGGATCCTTTGGATGGTGGCCCAGAAGTACTC 94545 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 ||| |||||||| ||||||| | ||| |||| |||| | ||| | | || Sbjct 94546 GTCTGGGCTGTATGTGTCCTGTGCCCACACCATAAACTTTTGGATGTTTTTATTTTCTAG 94605 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG--- 160468 || | || || ||| | || ||||| || || ||||| || || | || Sbjct 94606 CACATACCCCACATATTCTCTACTGACCACAAAATAGGCACTGCCTGAAAAGAGAGGAGT 94665 Query 160469 TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | || || || || |||||| ||| || ||||| | || || || | | Sbjct 94666 TTTGAGTGGGGGACGC---TCTTTGGCCTTCCCTGTGTTGGTCAGTTTCCCATTGATGAC 94722 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | |||| ||||||||| | ||| | | |||||| || || || || | Sbjct 94723 TTCATAATGCTTTTTCCACCTGTCTTCCTTATTGGATGGCATCTTCTCTGTTTCCAGGTT 94782 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| |||| || || || || | | |||| || || ||||| || || | || || Sbjct 94783 GTTTTCACCCATGAATGACTTGAGTTTCCTGACCATGTCCAGGTTGGTTTTAATAGGGAA 94842 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || | || || | || |||| ||||||||| | || |||| || ||||||| | Sbjct 94843 ATCCATCCCACAAAGATTGATCAAGTACTTCCAGTCTGCACTCATTCTGTACAGGTCCTT 94902 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | || || || || || |||||||| ||||| || || |||| | | Sbjct 94903 CATGCAGTTGAGGTCAGCTTGGACCCGACTCCAGGAGGCGTAGACCACACTCTCCAACTG 94962 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA 160825 ||||||||| ||||||||| |||||| ||| |||| || |||| | || | |||| | Sbjct 94963 ACTGGCCACGAAGACGTTACTGAAACAGGACGCGATGCCAGTCACCGCTGCTAAAAAGGA 95022 Query 160826 --CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 | ||| || ||| ||||||||| | ||| || | |||||||||| |||||| Sbjct 95023 GTCCTCTGAT-----TTTTTGTCCACGTGGATGCAGTAGAAGTTCTGAGGCATGTAGATA 95077 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 ||||| || | ||| || | ||| || ||||| ||||| | ||| || || ||||| || Sbjct 95078 GCCCTCAGGAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACAATGGAATAGGCAATT 95137 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 || || | | ||| || ||| |||| | | | ||| || || |||||||| || Sbjct 95138 GGGAAGCCCGCCTCTTCTTTACTAAGGGGCTCCACGATGTATTTGCGTGTCTTGATGAAG 95197 Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032 | | || || | ||||||||||| || Sbjct 95198 GAGGCGCAGTCACCGGTCATGTTGATGTA 95226 >seq1040 Length=283773 Score = 109 bits (120), Expect = 6e-19 Identities = 166/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 167871 CCATTGCTAAGCGTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATAT 167929 || ||||| || |||| | ||| || || ||||| |||| || | |||| ||| || Sbjct 101899 CCTTTGCTCAGAGTTTCCTTGTA-GTTGGTCACAGTCCCCAGGTGCAACACCTGGCAGAT 101957 Query 167930 CACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACT 167989 ||| || ||||| || |||||||| || ||||| || | | || || || ||| Sbjct 101958 CACTTCC---TTTCCCACCTGACTCTTGGGGTCTTTGACCCGGAGGATACTGGTAACAGA 102014 Query 167990 TGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCAC 168049 ||| || |||||| |||| | | | | ||||| |||||||||||||| || || || Sbjct 102015 TGTGGTCCCATTGGGATGCGACAGACTCTCAGTGCTATTCTCAATCCCTGACCCAGCGAC 102074 Query 168050 CTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 ||||||| || | ||| || || || || || |||||||| || ||||||| Sbjct 102075 CTTCCAGGCGATCATAGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 102127 >seq2891 Length=181477 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 160221 ACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTG 160280 ||||| ||||| | || |||||||| || |||||||| || || |||||| ||| || Sbjct 109889 ACGTCTCCTTCATGGTCTTGCCACTTGACCAACCTGGCAATGGCAGTCATGTCTGAGATG 109948 Query 160281 TCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCC 160340 || || |||| | | |||||| | || || | | | ||| || ||||||||| Sbjct 109949 TCATACTTGTGGTTGAAGGGAACAGAGCCAGGCATCCATGAGGCACGATGAAGGGTGGCC 110008 Query 160341 CACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 || |||||||| || ||||| || ||||| || |||||| || Sbjct 110009 CAGAGGTGTTCATCTGGGCTATAGGTGTCTTTTACCCATTCAAT 110052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577066547167320