Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15962 86.0 7e-12 seq15872 86.0 7e-12 seq606 82.4 9e-11 >seq15962 Length=33107 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 |||||||||||||||| ||||| |||||| || || |||||||| ||||||||||||| Sbjct 15341 AGAATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGA 15282 Query 65501 AGCGAGTTGGGGACTAT 65517 || |||| || || ||| Sbjct 15281 AGAGAGTAGGCGAGTAT 15265 >seq15872 Length=96178 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 |||||||||||||||| ||||| |||||| || || |||||||| ||||||||||||| Sbjct 40015 AGAATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGGAAGACTAACTTCTTTGAGA 39956 Query 65501 AGCGAGTTGGGGACTAT 65517 || |||| || || ||| Sbjct 39955 AGAGAGTAGGCGAGTAT 39939 >seq606 Length=273764 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || ||||| ||||| ||||| ||| | || || |||||| Sbjct 40754 TCTCAGACAGAGACGGGTACCCCATACATGCTCTACAAAGATTCCTGCAATCGGAAGAGC 40695 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| | || ||||||||||||| || || || ||||| ||||| ||||||| Sbjct 40694 AACCAGCAAAACCTGGGAACAATCAAATGCAGCAACCTATGCACAGAAATAGTAGAGTAT 40635 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 40634 ACCAGCAAAGATGAG 40620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596411829712160