Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq15962 113 7e-20 seq15872 100 4e-16 seq1696 87.8 3e-12 >seq15962 Length=33107 Score = 113 bits (124), Expect = 7e-20 Identities = 285/434 (66%), Gaps = 13/434 (3%) Strand=Plus/Plus Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222 ||| ||| |||||| || ||||| ||| || | || || |||||| | ||| || Sbjct 15556 AAAGTCACAGTGTAAGCCCTCATCCCTGCTAATAAGCTCATTGGAAAACGTGAGCCCTGG 15615 Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282 ||||| |||| ||| || ||||| ||||| ||||| ||| || ||||||||| || || Sbjct 15616 CATTAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCC 15675 Query 18283 CTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCA 18342 || | | || || || ||||| || | || | ||| | ||||| Sbjct 15676 TTCCAAGGCGGCAAAGGC-------CTTTCTCCATAGGTGGCCTCTTTGTCCCCAATCCA 15728 Query 18343 TTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAA 18402 ||||| ||| | | | ||| || || | | || ||||| || | Sbjct 15729 ACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGGCATTGTTTAAATGGCATTGAAGAG 15788 Query 18403 ATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGA 18462 | || ||||||||| |||||| || |||||||| || | | | ||||||||||| Sbjct 15789 AAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGA 15848 Query 18463 ATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA- 18521 ||||||| ||||||| || || || || | ||| || | | || || | | ||| | Sbjct 15849 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATTTGCAC 15908 Query 18522 -TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAA 18579 || | ||| ||||| || |||||||| ||||| ||||| || ||| || ||| || Sbjct 15909 TTCTTGGCT---AAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTAGCTGCAAA 15965 Query 18580 AAATGCCAAAACAT 18593 || || | ||||| Sbjct 15966 GAAAGCGAGAACAT 15979 >seq15872 Length=96178 Score = 100 bits (110), Expect = 4e-16 Identities = 346/538 (64%), Gaps = 7/538 (1%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| |||||| || ||| | ||| || | || || |||||| | | Sbjct 40225 CAGGCAAAGTCACAGTGTAAGCCCTCACCCCTGCTAATAAGCTCATTGGAAAACGTGAGC 40284 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | |||| ||| || ||||| ||||| ||||| ||| || ||||||||| Sbjct 40285 CCTGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAG 40344 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || | || || || || ||| | | ||||| || | || | ||| | Sbjct 40345 ATTTCTTCCACAGCGGCAAAGGCTGT-AGCCTTTCTCCATAGGTGGCCTCTTTGTCCCCA 40403 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 ||||| ||||| ||| | | | ||| | || | | || ||||| Sbjct 40404 ATCCAACGCAAGGCCCAGTCTGCCTTCTTCTTCACACAAGACATTGTTTAAATGGCATTG 40463 Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 || ||| || ||||||||| |||||| || |||||||| || | | | |||||| Sbjct 40464 AAGAAAAATTCCCTTTCTTTGGGATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATT 40523 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517 |||||||||| | ||||||| || || || || | ||| || | || || | | | Sbjct 40524 TCAGAATGTACGTTTTCCATGGCAATTTGTAATCCATAGAAACAGTGGGCTTCTGTAATT 40583 Query 18518 TGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 || | || | ||| ||||| || |||||||| ||||| ||||| || ||| | | Sbjct 40584 TGCACTTCTTGGCT---AAATCGCTCCACCAAATTTTCATTCACTATGCCATCACTGGCT 40640 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || || || || | ||||| ||||| | | | || | ||| || | ||| Sbjct 40641 GCAAAGAAAGCAAGAACATGAGATATGAAGTATCTCTCCTCCGGCTTCAGCAGCTCCCAG 40700 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | | || || || || ||||| || || || | |||||| || || | ||||||| Sbjct 40701 TGCTGGATGTCCTTGGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCGGCCT 40758 >seq1696 Length=1012329 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | || || | ||||| || || | || | || || || Sbjct 927070 AAAATGCAGATTTTCGTAAACACCCTTACTGGGAAGACCACCACGCTTGAGGTTGAGCCC 927011 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || || || || || ||||| ||||| || ||||| || Sbjct 927010 TCGGATACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCGGAT 926951 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || |||||| |||| | ||| |||||||| || |||||| | ||||||||||| || Sbjct 926950 CAGCAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTATCAGACTAC 926891 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || || ||| ||| | || |||||| | | ||| ||| Sbjct 926890 AACAT-TCAAAAGGAGTCCACCCTTCATCTTGGGTTGAGA 926852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731678447301200