Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1925 116 7e-21 seq1696 111 3e-19 seq1660 109 1e-18 seq944 105 1e-17 seq5833 100 6e-16 seq15125 93.3 8e-14 >seq1925 Length=520723 Score = 116 bits (128), Expect = 7e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || || || || || ||| |||| |||| ||| ||||||||||||| Sbjct 381475 CTTTTGA-ATGTTGTAGTCTGACAAAGTGCGTCCATCTTCCAGTTGCTTACCAGCAAAGA 381417 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || ||| || | || |||||||| ||||| || || || || ||||| Sbjct 381416 TCAGTCTTTGCTGAACA-GAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTT 381358 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| |||||| | ||| || || || || ||||| || ||||| | ||||| | || Sbjct 381357 CTATAGCATCTGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCAGTAAGGGTTTTCACAA 381298 Query 192527 ATATCTGCATTTT 192539 | ||||| ||||| Sbjct 381297 AAATCTGTATTTT 381285 >seq1696 Length=1012329 Score = 111 bits (122), Expect = 3e-19 Identities = 141/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || || ||||| || ||| |||| |||| ||| ||||||||||||| Sbjct 926879 CTTTTGA-ATGTTGTAGTCTGATAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGA 926937 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || ||||| || || |||||||| ||||| || || || || ||||| Sbjct 926938 TCAGTCTTTGCTGATCCGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTT 926997 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| ||| || | || || || || || |||| || ||||| | || || | | Sbjct 926998 CTATAGTATCCGAGGGCTCAACCTCAAGCGTGGTGGTCTTCCCAGTAAGGGTGTTTACGA 927057 Query 192527 ATATCTGCATTTT 192539 | ||||||||||| Sbjct 927058 AAATCTGCATTTT 927070 >seq1660 Length=831338 Score = 109 bits (120), Expect = 1e-18 Identities = 133/180 (74%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 || || || || || ||| |||| |||| ||| |||||||||||||| | ||| || ||| Sbjct 181650 TAGTCTGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGA 181591 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 || || || |||||||| ||||| || || || || ||||| ||||| ||| || Sbjct 181590 TCCGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTATCCGAG 181531 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA-AATATCTGCATTTT 192539 ||| || || || || ||||| || ||||| | ||||| || || ||||||||||| Sbjct 181530 AGTTCAACCTCGAGCGTGATGGTCTTCCCAGTAAGGGTTTTTTTAGAAAATCTGCATTTT 181471 >seq944 Length=800573 Score = 105 bits (116), Expect = 1e-17 Identities = 140/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || || || || || | | |||| |||| ||| ||||||||||||| Sbjct 497727 CTTTTGA-ATGTTCTAGTCTGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGA 497669 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| || |||||||| || ||||| || ||||| || || || || ||||| Sbjct 497668 TCAGTCTTTGCTGATCAGGAGGAATTCCGTCCTTATCCTGGATCTTGACCTTGACATTTT 497609 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| |||||| | ||| || || || | ||||| || || || | | ||| || | Sbjct 497608 CTATAGCATCTGAGGGTTCAACCTCAAGCGAGATGGTCTTCCCCGTAAGGGCTTTCATGA 497549 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 497548 AAATCTGCATCTT 497536 >seq5833 Length=136108 Score = 100 bits (110), Expect = 6e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 |||| ||| |||||||||||||| | ||| || || ||||| || |||||||| ||||| Sbjct 78610 TCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCC 78551 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || || || ||||| ||||| ||| || | || ||||| || || ||||| Sbjct 78550 TGGATCTTGGCCTTGACATTTTCTATAGTATCCGAGGGCTCAACTTCGAGTGTGATGGTC 78491 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||| | ||||| || || |||||||| || Sbjct 78490 TTCTCAGTAAGGGTTTTTATGAAAATCTGCATCTT 78456 >seq15125 Length=584520 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| | || || | ||| | || | ||| || | ||| || || || || Sbjct 492571 ACCACCACAAAGTCTTATCACAAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCTGA 492512 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | | |||| |||| ||| |||||||||||||| | ||| || |||||||| || Sbjct 492511 CAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 492452 Query 192429 TATTCCTTCTTTATCTTGTATTTT 192452 |||||||| |||||||| || || Sbjct 492451 AATTCCTTCCTTATCTTGGATCTT 492428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984213133006950