Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1696 113 8e-20 seq1660 111 3e-19 seq1925 109 1e-18 seq944 109 1e-18 seq5833 104 4e-17 seq15125 87.8 3e-12 >seq1696 Length=1012329 Score = 113 bits (124), Expect = 8e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 || |||| | ||||| || | | ||| | || | ||| || ||| || || |||| Sbjct 926839 TAGCACCACGAAGTCTCAACCCAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCTG 926898 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 |||||| ||| | || |||| ||| ||||||||||| || | ||| || || || || | Sbjct 926899 ATAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCCGGAG 926958 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | |||||||| ||||| || || || || ||||| ||||||||| || | || | Sbjct 926959 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTATCCGAGGGCTCAA 927018 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || || || |||| || ||||| | || || | ||| ||||||||||| Sbjct 927019 CCTCAAGCGTGGTGGTCTTCCCAGTAAGGGTGTTTACGAAAATCTGCATTTT 927070 >seq1660 Length=831338 Score = 111 bits (122), Expect = 3e-19 Identities = 170/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| ||||| || || | ||| | || | ||| || ||| | Sbjct 181711 TTTCTTAGCACCACCAGGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGGT 181652 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || ||||| |||| ||| | || |||| ||| ||||||||||| || | ||| || || Sbjct 181651 GTAGTCTGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTG 181592 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 || || || |||||||| ||||| || || || || ||||| ||||||||| || Sbjct 181591 ATCCGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTATCCGA 181532 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT-GAATATCTGCATTT 172071 ||| || || || || ||||| || ||||| | ||||| | ||| |||||||||| Sbjct 181531 GAGTTCAACCTCGAGCGTGATGGTCTTCCCAGTAAGGGTTTTTTTAGAAAATCTGCATTT 181472 Query 172072 T 172072 | Sbjct 181471 T 181471 >seq1925 Length=520723 Score = 109 bits (120), Expect = 1e-18 Identities = 169/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | | | | || | ||| || ||| || Sbjct 381523 TTTCTTAGCACCACCACGAAGTCTCAACACAAGAGGAAGGGTGGACTCCTTTTGAATGTT 381464 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || ||||| |||| ||| | || |||| ||| ||||||||||| || | ||| || || Sbjct 381463 GTAGTCTGACAAAGTGCGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTG 381404 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 || | || |||||||| ||||| || || || || ||||| ||||| |||||| Sbjct 381403 AACA-GAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGCATCTGA 381345 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || ||||| | ||||| | || ||||| ||||| Sbjct 381344 GGGTTCAACCTCAAGCGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGTATTTT 381285 >seq944 Length=800573 Score = 109 bits (120), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | || ||| || ||| || Sbjct 497775 TTTCTTAGCACCACCACAAAGTCTCAACACAAGATGAAGGGTGAACTCCTTTTGAATGTT 497716 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || ||||| |||| | | | || |||| ||| ||||||||||| || | ||| || || Sbjct 497715 CTAGTCTGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTG 497656 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||||| || ||||| || || || || ||||| ||||| |||||| Sbjct 497655 ATCAGGAGGAATTCCGTCCTTATCCTGGATCTTGACCTTGACATTTTCTATAGCATCTGA 497596 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || | ||||| || || || | | ||| ||||| |||||||| || Sbjct 497595 GGGTTCAACCTCAAGCGAGATGGTCTTCCCCGTAAGGGCTTTCATGAAAATCTGCATCTT 497536 >seq5833 Length=136108 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 |||| ||| ||||||||||| || | ||| || || ||||| || |||||||| ||||| Sbjct 78610 TCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCC 78551 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || || || || ||||| ||||||||| || | || ||||| || || ||||| Sbjct 78550 TGGATCTTGGCCTTGACATTTTCTATAGTATCCGAGGGCTCAACTTCGAGTGTGATGGTC 78491 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||| | ||||| ||||| |||||||| || Sbjct 78490 TTCTCAGTAAGGGTTTTTATGAAAATCTGCATCTT 78456 >seq15125 Length=584520 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | || | ||| || | || || Sbjct 492580 TTTCTTAGCACCACCACAAAGTCTTATCACAAGATGAAGGGTGGACTCCTTTGGGATGTT 492521 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || ||||| |||| | | | || |||| ||| ||||||||||| || | ||| || || Sbjct 492520 GTAGTCTGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTG 492461 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 ||||| || |||||||| |||||||| || || Sbjct 492460 ATCAGGAGGAATTCCTTCCTTATCTTGGATCTT 492428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904896625470600