Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3540 93.3 3e-14 seq304 86.0 5e-12 >seq3540 Length=97209 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| | || |||| | | Sbjct 53630 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 53689 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||| || || |||||| | ||| || || Sbjct 53690 CGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 53749 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || |||||||| || | | || || | |||||||| Sbjct 53750 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 53809 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||| || |||||| ||||| || Sbjct 53810 CATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 53843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| | || |||| | || Sbjct 54087 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 54146 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| || || |||||| | ||| || ||| Sbjct 54147 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 54206 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || || | ||||||||| Sbjct 54207 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 54266 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || |||||| ||||| || Sbjct 54267 ATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 54299 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| | || ||| | || Sbjct 53859 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGC 53918 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| || || |||||| | ||| || ||| Sbjct 53919 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 53978 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || || | ||||||||| Sbjct 53979 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 54038 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || |||||| ||||| || Sbjct 54039 ATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 54071 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| | || |||| | | Sbjct 54540 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 54599 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| || || |||||| | ||| || ||| Sbjct 54600 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 54659 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || || | ||||||||| Sbjct 54660 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 54719 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || |||||| ||||| || Sbjct 54720 ATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 54752 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| | || |||| | || Sbjct 54993 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACC-TGGAGGTGGAGCCCAGC 55051 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| || || |||||| | ||| || ||| Sbjct 55052 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 55111 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || || | ||||||||| Sbjct 55112 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 55171 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || |||||| ||||| || Sbjct 55172 ATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 55204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| | || |||| | | Sbjct 54315 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 54374 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||| ||| || || |||||| | ||| || | ||| Sbjct 54375 GACACCATCGAGAATGTCAAGCAAA-GATCCAGGACAAGGAAGGCATCCCCCTG-ACCAG 54432 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || || | ||||||||| Sbjct 54433 CAGAGGCTGATCT-TGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 54491 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || |||||| ||||| || Sbjct 54492 ATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 54524 >seq304 Length=872862 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || || || | || ||||| ||||| ||| | ||| |||| | Sbjct 181290 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCC 181349 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | || || ||| | || ||| ||||| |||||||||||| | ||| || Sbjct 181350 AGTGACACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGAC 181409 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || |||||||| || | | || | | |||||| Sbjct 181410 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTAC 181469 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || || ||||| || | ||| |||| Sbjct 181470 AACATCCAGAAAGAGTCCACCCTCCACCTGGT 181501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398773949243173