Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq2847 102 1e-16 seq3106 93.3 8e-14 seq9485 87.8 3e-12 >seq2847 Length=845985 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || || |||||||||| | ||||||||||| | || || || || ||||||||||| || Sbjct 325963 GCTTTGTGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACAGTGTTTTTTATT 325904 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || || || ||| || || || || |||||||| | || |||||| Sbjct 325903 CTGAGGAAGAAAAACAACCAAGTTTCTTTCCTTCATGTCTATCATCACTGCACAATGTTT 325844 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | || ||||| ||| ||||||| || || Sbjct 325843 ACATTGTGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 325803 >seq3106 Length=183861 Score = 93.3 bits (102), Expect = 8e-14 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 48975 ACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCC 49034 |||||| |||||||||||| || ||| | |||| ||||| |||| ||||||| Sbjct 112249 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGAGCAATTCGATCACCC 112190 Query 49035 TTGGATACATTAAATGGTATAGAACTGAAATTAAATAATAGAACACCTACGTTACCTCTA 49094 || ||| | |||| | ||||| || | || |||||| || || |||||| Sbjct 112189 TTTTTTACTTCAAATTTCTCTTTGCCAAAATTGAACAGTATAACACCAACATTTCCTCTA 112130 Query 49095 TAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGAT 49154 || ||| || || |||||||| ||||| ||||| || | || ||| | || || Sbjct 112129 TAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAA 112070 Query 49155 CTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATTATATCTGTTTTTATT 49214 | ||||||| ||| || ||| | ||| ||| | ||| || |||||||||| Sbjct 112069 CGTGGAGCTACTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTTACA 112010 Query 49215 AATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATATAAGTCATAACCAGC 49273 | | | || ||||||| | || | |||||||| || || || | ||| || || || Sbjct 112009 AGTGCTTTCTCCATAGATGGTACTGTGTAATCATAGGCACTGTACAGGTCGTAGCCTGC 111951 >seq9485 Length=81507 Score = 87.8 bits (96), Expect = 3e-12 Identities = 200/300 (67%), Gaps = 1/300 (0%) Strand=Plus/Minus Query 48975 ACTTCTCTTATTTCTGGAT-ATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACC 49033 |||||| ||||||||||| | || ||| | |||| |||||| ||| |||||| Sbjct 924 ACTTCTTCTATTTCTGGATAAAAAAATCCGTTCACAAATGAGTTGAGCAATTGGATCACC 865 Query 49034 CTTGGATACATTAAATGGTATAGAACTGAAATTAAATAATAGAACACCTACGTTACCTCT 49093 ||| ||| |||||| | |||||||| | || |||||| || || | ||| Sbjct 864 CTTTTTTACTTTAAATTTCTCTTTGCCAAAATTAAACAGTATAACACCAACATTTCTTCT 805 Query 49094 ATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGA 49153 ||| ||| || || |||||||| ||||| ||||| || | || ||| | || || Sbjct 804 ATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGA 745 Query 49154 TCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATTATATCTGTTTTTAT 49213 | ||||||| ||| || ||| | ||| ||| | ||| || |||||||||| Sbjct 744 ACGTGGAGCTACTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTTAC 685 Query 49214 TAATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATATAAGTCATAACCAGC 49273 | | | || ||||||| | || | |||||| | || || || | ||| || || || Sbjct 684 AATTGCTTTCTCCATAGATGGTACTGTGTAATCACAGGCACTGTACAGGTCGTAGCCTGC 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903172281615520