Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1040 114 1e-20 >seq1040 Length=283773 Score = 114 bits (126), Expect = 1e-20 Identities = 163/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 171521 GTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTA 171580 || |||||||||| ||| || || | ||| ||||| |||| ||||||| ||||| || Sbjct 101926 GTCACAGTCCCCAGGTGCAACACCTGGCAGATCACTTCCT---TTCCCACCTGACTCTTG 101982 Query 171581 GGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGGTT 171640 || ||||| || | || || || ||||||||||| ||||| || |||| | | Sbjct 101983 GGGTCTTTGACCCGGAGGATACTGGTAACAGATGTGGTCCCATTGGGATGCGACAGACTC 102042 Query 171641 TTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTA 171700 | ||| ||||| || || || || || || || ||||| || | ||| ||||| | Sbjct 102043 TCAGTGCTATTCTCAATCCCTGACCCAGCGACCTTCCAGGCGATCATAGGGGCTGGGCGG 102102 Query 171701 GCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGT 171749 ||||| ||||||||||| || |||| ||||| ||||| | |||| Sbjct 102103 GCAGTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAAATTGTAGT 102151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578279026427200