Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3540 93.3 3e-14 seq3495 84.2 1e-11 seq304 84.2 1e-11 >seq3540 Length=97209 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || | ||| ||| || || |||||||| || || Sbjct 54085 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 54026 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 54025 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 53966 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| || | ||||||||| | |||||| Sbjct 53965 ATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCGCTGGGTTCCAC 53907 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 53906 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 53859 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || | ||| ||| || || |||||||| || || Sbjct 53857 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 53798 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 53797 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 53738 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| || | ||||||||| | ||||| Sbjct 53737 ATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCAC 53679 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 53678 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 53631 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || | ||| ||| || || |||||||| || || Sbjct 54313 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 54254 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 54253 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 54194 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| || | ||||||||| | ||||| Sbjct 54193 ATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCAC 54135 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 54134 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54087 Score = 89.7 bits (98), Expect = 3e-13 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTT 33572 || ||| |||||||||| | ||| | ||||| || | ||| ||| || || ||||| Sbjct 54776 AAGATCTGCACCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTT 54717 Query 33573 GTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 ||| || || || ||||| | || |||| || || || ||||| |||| | |||||| Sbjct 54716 GTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTG 54657 Query 33633 ATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGC 33691 || | || | ||||| ||||| || || || | |||| || | |||||| | Sbjct 54656 GTCAGGGGGGATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCAC 54598 Query 33692 TTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | ||||| || | ||||| || || || || | || || || ||||||||||| Sbjct 54597 TGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54540 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | ||||| || | ||| ||| || || |||||||| || || Sbjct 55218 CCACCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 55159 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 55158 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 55099 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| || | ||||||||| | ||||| Sbjct 55098 ATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCAC 55040 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 55039 CTCCAG-GTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 54993 >seq3495 Length=1667739 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || ||| ||||| || |||||||| || || Sbjct 878786 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAA 878845 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 878846 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 878905 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || ||||| ||| || | |||||| || | ||||| Sbjct 878906 ATGCCTTCTTTATCCTGGATCTTGGCTTTCA-CATTCTCGATGGTGTCACTGGGCTCCAC 878964 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 878965 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879012 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | |||| || || ||| |||||| || |||||||| || || Sbjct 879014 CCGCCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 879073 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 879074 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 879133 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || ||||| ||| || | |||||| || | ||||| Sbjct 879134 ATGCCTTCTTTATCCTGGATCTTGGCTTTCA-CATTCTCGATGGTGTCACTGGGCTCCAC 879192 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 879193 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 879240 >seq304 Length=872862 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | |||| || || ||| |||||| || |||||||| || || Sbjct 181519 CCGCCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 181460 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 181459 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 181400 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || ||||| ||| || | |||||| || | ||||| Sbjct 181399 ATGCCTTCTTTATCCTGGATCTTGGCTTTCA-CATTCTCGATGGTGTCACTGGGCTCCAC 181341 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 181340 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181293 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || || ||| ||||| || |||||||| || || Sbjct 182202 CCACCCCTCAGACGGAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAA 182143 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 182142 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 182083 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || ||||| ||| || | |||||| || | ||||| Sbjct 182082 ATGCCTTCTTTATCCTGGATCTTGGCTTTCA-CATTCTCGATGGTGTCACTGGGCTCCAC 182024 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 182023 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181976 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33529 CTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTG 33588 |||| ||| | |||| || || ||| |||||| || |||||||| || || || ||| Sbjct 181969 CTCAGACGGAGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTG 181910 Query 33589 CGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCT 33648 || | || |||| || || || ||||| || | | |||||| || | || | ||| Sbjct 181909 CGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCT 181850 Query 33649 TCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAAC 33707 ||||| || || || ||||| ||| || | |||||| || | ||||| || | Sbjct 181849 TCTTTATCCTGGATCTTGGCTTTCA-CATTCTCGATGGTGTCACTGGGCTCCACTTCCAG 181791 Query 33708 CGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || || || | || || || ||||||||||| Sbjct 181790 GGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 181749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328619243365440