Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1660 113 1e-19 seq1696 104 6e-17 seq1925 102 2e-16 seq15125 100 7e-16 seq3495 93.3 1e-13 seq304 93.3 1e-13 seq1905 91.5 3e-13 seq944 91.5 3e-13 seq1527 87.8 4e-12 seq2179 84.2 5e-11 >seq1660 Length=831338 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || ||| || || || | ||| Sbjct 181490 AAAACCCTTACTGGGAAGACCATCACGCTCGAGGTTGAACTCTCGGATACTATAGAAAAT 181549 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| ||||| |||||||| ||||| Sbjct 181550 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCGGATCAGCAAAGACTGATCTTT 181609 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||| | | || || ||||| Sbjct 181610 GCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCAGACTACACCATTCAAAAGGAGTCC 181669 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 || ||||| ||||| |||||||||| Sbjct 181670 ACCCTTCATCTTGTGTTGAGACTTC 181694 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| ||||| || ||||| || || | | ||||| | |||||| | Sbjct 181694 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGGTGTAGTCTGACAAAGTAC 181635 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 181634 GTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGA 181591 >seq1696 Length=1012329 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| ||||| |||||||| ||||| || || ||| Sbjct 926983 AAGATCCAGGATAAGGAAGGAATTCCTCCGGATCAGCAAAGACTGATCTTTGCTGGTAAG 926924 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | ||||| | || |||||| | || || ||||| || ||||| Sbjct 926923 CAACTGGAAGATGGACGTACTTTATCAGACTACAACATTCAAAAGGAGTCCACCCTTCAT 926864 Query 206374 CTTGTTTTGAGACTTCG 206390 |||| ||||||||||| Sbjct 926863 CTTGGGTTGAGACTTCG 926847 >seq1925 Length=520723 Score = 102 bits (112), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || ||||| | || || ||| || || Sbjct 381291 CAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACGCTTGAGGTTGAACCCTCAGAT 381350 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| ||||| || || || ||||||||| | | | ||| Sbjct 381351 GCTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCTGTTCAG-CAA 381409 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| | Sbjct 381410 AGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGCACTTTGTCAGACTACAACATT 381469 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || |||| ||||| ||||||||||| Sbjct 381470 CAAAAGGAGTCCACCCTTCCTCTTGTGTTGAGACTTCG 381507 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||| || ||||| || || | || ||||| | |||||| Sbjct 381507 CGAAGTCTCAACACAAGAGGAAGGGTGGACTCCTTTTGAATGTTGTAGTCTGACAAAGTG 381448 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGAA 204857 | |||||||||||| ||||| || || ||||| || | ||| |||| Sbjct 381447 CGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGAA 381402 >seq15125 Length=584520 Score = 100 bits (110), Expect = 7e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||||||| || || |||||||| ||||| || || ||| Sbjct 492428 AAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGTAAG 492487 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | || |||||| ||| || ||||| || ||||| Sbjct 492488 CAACTGGAAGATGGATGTACTTTGTCAGACTACAACATCCCAAAGGAGTCCACCCTTCAT 492547 Query 206374 CTTGTTTTGAGACTT 206388 ||||| | |||||| Sbjct 492548 CTTGTGATAAGACTT 492562 >seq3495 Length=1667739 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 879225 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAT 879166 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || |||||||| ||| || ||| || || || ||||| Sbjct 879165 GTGAAAGCCAA-GATCCAGGATAAAGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTT 879107 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || |||||| |||||||||| | || | | || |||||| ||||||||||||| Sbjct 879106 TGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAACATCCAGAAAGAGTC 879047 Query 206364 TACTCTTCACCTTGT 206378 || || ||||| || Sbjct 879046 CACCCTCCACCTGGT 879032 >seq304 Length=872862 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 181308 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAT 181367 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || |||||||| ||| || ||| || || || ||||| Sbjct 181368 GTGAAAGCCAA-GATCCAGGATAAAGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTT 181426 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || |||||| |||||||||| | || | | || |||||| ||||||||||||| Sbjct 181427 TGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAACATCCAGAAAGAGTC 181486 Query 206364 TACTCTTCACCTTGT 206378 || || ||||| || Sbjct 181487 CACCCTCCACCTGGT 181501 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 181764 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAT 181823 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || |||||||| ||| || ||| || || || ||||| Sbjct 181824 GTGAAAGCCAA-GATCCAGGATAAAGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTT 181882 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || |||||| |||||||||| | || | | || |||||| ||||||||||||| Sbjct 181883 TGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAACATCCAGAAAGAGTC 181942 Query 206364 TACTCTTCACCTTGT 206378 || || ||||| || Sbjct 181943 CACCCTCCACCTGGT 181957 >seq1905 Length=529901 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || |||||||||| || || ||||||||||||||| || || ||| Sbjct 505184 AAGATCCAGGATAAGGAAGGAATTTCTCCTGATCATCAAAGACTTATCTTTGCTGGTAAG 505125 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | ||| || | || |||||| || | ||||| || ||||| Sbjct 505124 CAACTGGAAGATGGATGTACTGTGTCAGACTACAACACTCAAAGGGAGTCCACCCTTCAT 505065 Query 206374 CTTGTTTTGAGAC 206386 || || |||| || Sbjct 505064 CTGGTGTTGAAAC 505052 >seq944 Length=800573 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || |||||| || || |||||||| ||||| || || ||| Sbjct 497623 AAGATCCAGGATAAGGACGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGTAAG 497682 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | || || ||| | || || |||| || ||||| Sbjct 497683 CAACTGGAAGATGGATGTACTTTGTCAGACTAGAACATTCAAAAGGAGTTCACCCTTCAT 497742 Query 206374 CTTGTTTTGAGACTT 206388 ||||| ||||||||| Sbjct 497743 CTTGTGTTGAGACTT 497757 >seq1527 Length=1040171 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || | || ||||||||| || || |||||||| ||||| || || ||| Sbjct 794885 AAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGTAAG 794944 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | || |||| | | | || ||||| | ||||| Sbjct 794945 CAACTGGAAGATGGATGTACTTTGTCAGACTACAGCATTTAAAAGGAGTCCATCCTTCAT 795004 Query 206374 CTTGTTTTGAGACTTC 206389 ||||| |||||||||| Sbjct 795005 CTTGTGTTGAGACTTC 795020 >seq2179 Length=561703 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAA-GACTTATCTTCGCCGGAAA 206312 ||||| || || || |||||||| || || |||| |||| ||||| | || || Sbjct 449797 AAGATCCAGGATAAGGAAGGAATGCCTCCTGATCAGCAAAAGACTGATCTTTACTGGTAA 449856 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| |||||||||||| | | |||| | || |||||| | || || |||||||| ||||| Sbjct 449857 GCAATTGGAAGATGGACGTATTTTGTCAGACTACAACATTCAAAAGGAGTCTACCCTTCA 449916 Query 206373 CCTTGTTTTGAGACTT 206388 ||| ||||||||| Sbjct 449917 TCTTAAGTTGAGACTT 449932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181500439034597