Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq7191 269 3e-67 seq1040 246 4e-60 seq3663 147 3e-30 seq1391 132 6e-26 seq2511 125 8e-24 >seq7191 Length=127218 Score = 269 bits (298), Expect = 3e-67 Identities = 469/680 (69%), Gaps = 4/680 (1%) Strand=Plus/Plus Query 146826 AAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGG 146885 ||| ||||| | ||||| || || || ||| ||| | | || |||||||| || Sbjct 41146 AAAGTCTTCAACTCTGAAGTCATCAATTGTCTCAACCTTTCATAGGATTTTGAGCTTAGG 41205 Query 146886 GAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAG 146943 ||| |||| || | || || ||||| ||||||| ||||| | ||| || ||||| Sbjct 41206 GAAAGGTCTTGGTT--CTCGCTGAAGCTGGGTTTTCAGTGGCTCAATGTGATTCAGGTAA 41263 Query 146944 ACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCC 147003 | || || || |||| || || |||||||| || |||| ||||| || | ||| || Sbjct 41264 ATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCTGTGATGTGTGCA 41323 Query 147004 ACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCC 147063 | ||||||||||||||| | |||||||| ||||||||||| || ||||| |||||||| Sbjct 41324 ATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCCATGTCT 41383 Query 147064 CCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGG 147123 || |||| |||||| |||||||| || || || | || |||| || |||||||| || Sbjct 41384 CCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACCACATAGAACTGGCAGAGA 41443 Query 147124 ATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACC 147183 ||||| || ||||||||||| || || || ||||||||||| | | | Sbjct 41444 GCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATCTTTTGGGTTCCAGGCACACATGATG 41503 Query 147184 AGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACG 147243 | | ||| || ||||| | || || || || || ||||||||| || Sbjct 41504 ATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACT 41563 Query 147244 CCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGG 147303 || || || ||| | || || ||| || ||||| |||||||||||| Sbjct 41564 CCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGG 41623 Query 147304 AAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGA 147363 ||||| || ||||| |||||||| || | || | || || ||| | | | | Sbjct 41624 AAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTCCAAA 41683 Query 147364 AACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAG 147423 || || ||| || | ||| |||||||| ||||||||||| || || ||||||| Sbjct 41684 AAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCCTTAGCA 41743 Query 147424 TCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTC 147483 | ||||| ||| ||| ||||| ||||||||||||||||| ||| |||| || || | Sbjct 41744 TTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTCCAGAATACACGT 41803 Query 147484 TTGGTGGTCAGCAGGGGGAA 147503 ||||| | ||||| || || Sbjct 41804 TTGGTTATAAGCAGAGGAAA 41823 >seq1040 Length=283773 Score = 246 bits (272), Expect = 4e-60 Identities = 246/319 (77%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || | ||||||||| || || || ||| | ||| || || Sbjct 104508 GTGGTGACCCAGGATGAAAGAGAGCTGCTGAATACACCTGCATCCTTACGATGTTCTCTA 104449 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||||| ||||| | ||||||| || |||||||||| || | | ||||| Sbjct 104448 CAAACTTCCCAGGAAGCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAA 104389 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| |||| ||||| |||| ||||| ||||||||||| || |||||||||| | Sbjct 104388 AACATGATTACTTACAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGACAGG 104329 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | |||||||| |||| ||||||| |||||| |||| || || |||||||| || || Sbjct 104328 GTCAACATCACTGAGCTGGGACTCCGGAACTCAGCCATTACCTTCTGGAATACAACATTG 104269 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| |||| || ||||| || | ||||| |||||||| ||||| || Sbjct 104268 GAGGATGAGGGGTGTTACATGTGTCTCTTCAATATGTTTGGTTCTGGGAAGATCTCAGGA 104209 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 104208 ACAGCCTGCCTCACCCTCT 104190 Score = 197 bits (218), Expect = 2e-45 Identities = 210/277 (76%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || | || || || ||||| |||||||| || ||||| || Sbjct 102173 GTACAGCCCATAGTATTCCTTTACTACAATTTCTTTGAAGACCACCTAAATATCACTTGC 102114 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||||||||| | ||| ||| |||||| | | ||||||| ||||| Sbjct 102113 TCTGCCACTGCCCGCCCAGCCCCTATGATCGCCTGGAAGGTCGCTGGGTCAGGGATTGAG 102054 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || || | ||| ||| || ||| | ||||| || || ||||| |||||| | |||| Sbjct 102053 AATAGCACTGAGAGTCTGTCGCATCCCAATGGGACCACATCTGTTACCAGTATCCTCCGG 101994 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || |||||||||||||||||| |||||||||| || |||||||| |||| ||||||||| Sbjct 101993 GTCAAAGACCCCAAGAGTCAGGTGGGAAAGGAAGTGATCTGCCAGGTGTTGCACCTGGGG 101934 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || |||| | ||||||| | ||||| |||| Sbjct 101933 ACTGTGACCAACTACAAGGAAACTCTGAGCAAAGGTA 101897 >seq3663 Length=525456 Score = 147 bits (162), Expect = 3e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | ||| || | ||||||||||||||| | |||||||| ||||||||||| Sbjct 215712 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGT 215653 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||| |||||||| || |||| |||||| |||||||| || || ||||||| || Sbjct 215652 ACACCCAGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCCCCGTTCACC 215593 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || |||||||| || ||||| || ||||||||||| Sbjct 215592 ACATAGAACTGGCAGAGAGCATGGCAGGGAGGCAGCGCCAT 215552 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| ||||||||||||||||| || ||||| |||||||| || | || | Sbjct 211954 GCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCG 211895 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 || || ||| | | ||||| || |||| || | ||| |||||||| ||||||| Sbjct 211894 GAAAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 211835 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || || ||||||| | ||||| ||| ||| || Sbjct 211834 TTGGAAGACAGTTCCTTAGCATTTGTGGATCCCTGGAAGA 211795 >seq1391 Length=362727 Score = 132 bits (146), Expect = 6e-26 Identities = 128/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| ||||||||| ||| ||| |||| Sbjct 152718 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGGTGGATGTGA 152659 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||||||||| |||| || ||||| ||||| || |||||||||| Sbjct 152658 TGCCTCAGGCGGAGACCCA------------TGGCCCAGACATCCAGACCCATGTAAACT 152611 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||| ||| |||||||| | || |||||||| ||| Sbjct 152610 CCCTGGGGGAAAGGCTGAAGACCCTCCGGCTGCAACTGCGGCGCTGT 152564 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| || || || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 150461 AGCTCCACGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 150402 Query 178522 TAGAAGCTTACATGACAACAAAAAT 178546 ||||||||||||||||||| || || Sbjct 150401 TAGAAGCTTACATGACAACGAAGAT 150377 >seq2511 Length=311798 Score = 125 bits (138), Expect = 8e-24 Identities = 208/299 (70%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 8607 GTGGTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCT 8666 || |||||||||||||||| | |||| | |||| |||| ||||||| |||| ||||| Sbjct 26597 GTTGTACTCTCTGGTGTTTATCATTGGCTTGGTTGGTAATGTCCTGGTGGTCCTGGTCCT 26538 Query 8667 CATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGG 8726 ||| ||||||||||||| | | |||||||| ||||| || |||||||||| | Sbjct 26537 CATGCAGTACAAGAGGCTTCGAAGCATGACCAGCATCTATCTCCTCAACCTGGCTGCTTC 26478 Query 8727 TGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCG-GGGGGAACT- 8784 ||||||| | | | ||||| || ||||| |||||| | | | | | | || |||| Sbjct 26477 TGACCTGGTCTTCCTCTTCACGCTGCCCTTCTGGATTGATTACAAGTTGAAGGACAACTG 26418 Query 8785 GGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCA 8844 ||| ||||| | |||||||||| | | || |||| | || | Sbjct 26417 GGTTTTTGGGA--------ATGGCATGTGTAAGCTGCTCTCTGGGCTTTATTATGTAGGG 26366 Query 8845 CTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 ||||||| ||| || | || ||||| |||||||| | |||||||| || || |||| Sbjct 26365 TTGTACAGTGAAATCTTTTTCATCATTCTGTTGACAATCGACAGGTACCTGGCCATTGT 26307 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| | ||| | |||| | ||| | ||||||| ||||||||||||||||||||||| Sbjct 130525 TGGACGTAGCCATGCAGGTGACAGAGGTCATCGCCTACACCCACTGCTGCGTCAACCCCG 130584 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| || ||||| || || ||||| Sbjct 130585 TCATCTATGCCTTTGTTGGTGAGCGGTTCC 130614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583333689304800