Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq7191 179 3e-40 seq3663 102 6e-17 >seq7191 Length=127218 Score = 179 bits (198), Expect = 3e-40 Identities = 425/636 (67%), Gaps = 11/636 (2%) Strand=Plus/Plus Query 111661 ATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATG 111720 ||||| || || || || || | || | ||| |||||| || | |||| ||| Sbjct 41192 ATTTTGAGCTTAGGGAAAGGTCTTGGTTCTCGCTGAAGCTGGGTTTTCAGTGGCTCAATG 41251 Query 111721 TGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCA 111780 ||||| | |||| ||| |||||||| | | ||| | || || | |||| || || Sbjct 41252 TGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCT 41311 Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 |||||||||||||||||||| ||||| ||| || || |||||||| || || ||||| Sbjct 41312 GTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCC 41371 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 || ||||| ||||| || | || |||||||| || || |||| | | |||||| Sbjct 41372 AGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACCACATAG 41431 Query 111901 AATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCA----TAAAGGGTCCCCA 111956 || || || || |||| || ||||||| |||||| | | | |||| ||| Sbjct 41432 AACTGGCAGAGAGCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATCTTTTGGGT-TCCA 41490 Query 111957 TGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAA 112016 ||||||||||| || |||||| | | || || ||| || || || || Sbjct 41491 GGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTG 41550 Query 112017 GAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACAT-CCAGTGTATGTTGCCCCAT 112075 |||||||||| |||| ||| | ||||| | | ||| | |||| ||| ||| Sbjct 41551 CAGCTGGTCTACTCCTTGACCTGAGTAATCTGAAT-TCATATCTTTGTAGTCTGCTCCAA 41609 Query 112076 AGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCC--CGGGGCTGTATCTGGAAA 112133 | || ||||| ||||| ||||| | || ||||| ||||| | | | | | | ||| Sbjct 41610 AATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGG--GCGGAAAA 41667 Query 112134 TTGCTCTCTATTCAACAAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGA 112193 | | || | ||| || || | || | || ||| || |||||||| || || Sbjct 41668 TCCCAGGCTGTCCAAAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGA 41727 Query 112194 TGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCC 112253 || | || | |||||||||||||| | |||||||| |||| || |||| ||| || Sbjct 41728 AGACAGTTCCTTAGCATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCC 41787 Query 112254 TTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 |||||| | || | ||| || | ||||| ||||| Sbjct 41788 CTTCCAGAATACACGTTTGGTTATAAGCAGAGGAAA 41823 >seq3663 Length=525456 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||||||||||||||| ||||| ||| || || |||||||| || || ||| Sbjct 215709 CCCGTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACA 215650 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || ||||| ||||| || | || |||||||| || || |||| | |||| Sbjct 215649 CCCAGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCCCCGTTCACCACA 215590 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| || ||||||| |||||| Sbjct 215589 TAGAACTGGCAGAGAGCATGGCAGGGAGGCAGCGCCATC 215551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391844536459591