Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq3106 107 2e-18 seq9485 100 3e-16 seq3277 98.7 1e-15 seq1134 89.7 6e-13 >seq3106 Length=183861 Score = 107 bits (118), Expect = 2e-18 Identities = 203/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || |||| | || || || || | || ||| ||| Sbjct 112249 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGAGCAATTCGATCACCC 112190 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || ||||| | |||| || || | |||||| || | | | ||| | |||||| || Sbjct 112189 TTTTTTACTTCAAATTTCTCTTTGCCAAAATTGAACAGTATAACACCAACATTTCCTCTA 112130 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || |||||||| || || || || ||||| || || Sbjct 112129 TAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAA 112070 Query 22815 CTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTACT 22874 | |||| || ||||||||| | || || | | |||| ||| || || |||| Sbjct 112069 CGTGGAGCTACTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTTACA 112010 Query 22875 AATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 | | ||| |||||| | || | ||||| ||| || || || || || || ||||| Sbjct 112009 AGTGCTTTCTCCATAGATGGTACTGTGTAATCATAGGCACTGTACAGGTCGTAGCCTGC 111951 >seq9485 Length=81507 Score = 100 bits (110), Expect = 3e-16 Identities = 205/301 (68%), Gaps = 3/301 (1%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGAT-GCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCC 22693 |||||| ||||||||||| || |||| | || ||||| || | | ||| || Sbjct 924 ACTTCTTCTATTTCTGGATAAAAAAATCCGTTCACAAATGAGTTGAGCAATTGGATCACC 865 Query 22694 CTTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCT 22753 ||| ||||| | |||| || || | ||||||||| | | | ||| | ||||| || Sbjct 864 CTTTTTTACTTTAAATTTCTCTTTGCCAAAATTAAACAGTATAACACCAACATTTCTTCT 805 Query 22754 GTAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGA 22813 |||||| |||||| ||||| || |||||||| || || || || ||||| || || Sbjct 804 ATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGA 745 Query 22814 TCTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTAC 22873 | |||| || ||||||||| | || || | | |||| ||| || || |||| Sbjct 744 ACGTGGAGCTACTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTTAC 685 Query 22874 TAATTG-TTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTG 22932 ||||| ||| |||||| | || | ||||| | | || || || || || || |||| Sbjct 684 -AATTGCTTTCTCCATAGATGGTACTGTGTAATCACAGGCACTGTACAGGTCGTAGCCTG 626 Query 22933 C 22933 | Sbjct 625 C 625 >seq3277 Length=962756 Score = 98.7 bits (108), Expect = 1e-15 Identities = 204/300 (68%), Gaps = 3/300 (1%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || | |||| | || || || || | || ||| ||| Sbjct 76380 ACTTCTTCTATTTCTGGATAAAAAATCTGTTCACAAATGAGCTGAGCAATTCAATCACCC 76439 Query 22695 TTATTTACGT-AAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCT 22753 || ||||| | ||||| | || || | ||||||||| | | ||| | ||||| || Sbjct 76440 TTTTTTACTTCAAAATTC-TCTTTGCCAAAATTAAACACTGTAACACCAACATTTCTTCT 76498 Query 22754 GTAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGA 22813 ||||||| |||||| ||||| || |||||||| || || || || ||| | || || Sbjct 76499 GTAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCGAACCAGA 76558 Query 22814 TCTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATTATAATATCAGTCATTAC 22873 | |||| || ||||||||| | || || | | |||| ||| || || | || Sbjct 76559 ACGTGGAGCTACTCTTCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCAC 76618 Query 22874 TAATTGTTTACCCATAGGTTCTATTACGTAATTATACGCGCTATATAGATCATATCCTGC 22933 | | ||| ||||| | | || | || || ||| || || || ||||| || ||||| Sbjct 76619 AAGTGCTTTCTCCATA-GATGTACTGTGTGATCATAGGCACTGTACAGATCGTAGCCTGC 76677 >seq1134 Length=343165 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 22643 TATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTAC 22702 ||||||||||| || |||| | || || || || | || ||| ||||| ||||| Sbjct 35238 TATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGAGCAATTCGATCACCCTTTTTTAC 35297 Query 22703 GTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTGTAATCTCT 22762 | |||| || || | ||||||||| | | | ||| |||||||| || |||||| Sbjct 35298 TTCAAATTTCTCTTTGCCAAAATTAAACAGTATAACACCAATATTTCCTCTATAATCTTC 35357 Query 22763 ATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGA 22822 |||||| ||||| || ||| ||| || || || || ||||| || || | |||| Sbjct 35358 ATCTATGACACCAGCTCCTGTATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 35417 Query 22823 TATTCTTCCATA 22834 || ||||||||| Sbjct 35418 TACTCTTCCATA 35429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603021281297680