Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2024 163 4e-35 >seq2024 Length=170185 Score = 163 bits (180), Expect = 4e-35 Identities = 297/423 (70%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGG-TATCTCGT 13666 |||||| | |||||||| | ||||||| ||||| | || |||| | || |||| Sbjct 95229 GACTACATCAACATGACCGGTGACTGCGCCTCCTTCATCAA-GACACGCAAATACATCGT 95171 Query 13667 GAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCA-TCGCCTACTCGATCGTGATCCACC 13725 | |||||| || ||||||| || | |||||| | ||||| || || ||| | || | Sbjct 95170 GGAGCCCCTTAGTAAAGAAGAGG-CGGGCTTCCCAATTGCCTATTCCATTGTGGTTCATC 95112 Query 13726 ACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACT 13785 ||||||| || ||| | || | ||||||||||| |||||| || |||||| |||||| Sbjct 95111 ACAAGATTGAAATGCTTGACAGGCTCCTGAGGGCTATCTACATGCCTCAGAACTTCTACT 95052 Query 13786 GCGTCCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGC 13843 || ||||||||||| || || | || | || | | | || | || | |||||| Sbjct 95051 GCATCCACGTGGACAAAAAATCAGAGGACTCCTTTTTAGCAGCGGTGACT--GGCATCGC 94994 Query 13844 CAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTG 13903 || ||| |||||| | ||||| | | || | ||||| |||| |||||| Sbjct 94993 GTCCTGTTTCAGTAACGTCTTCGTGGCCAGTCAGTTGGAGAGTGTGGTCTACGCCTCCTG 94934 Query 13904 GAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGT-CA-A 13960 |||||| || || || ||||||| ||||||| ||||||| || | | || || | Sbjct 94933 GAGTCGGGTCCAAGCTGACCTCAACTGCATGAAGGACCTGTACAGAAT---GAGTGCAGA 94877 Query 13961 GTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGAT 14020 |||| |||| || |||| || || |||||||| ||||| | || ||||||||||| || Sbjct 94876 CTGGAAGTACTTGATCAATCTTTGTGGGATGGATTTCCCTATTAAAACCAACCTGGACAT 94817 Query 14021 CGT 14023 || Sbjct 94816 GGT 94814 Score = 84.2 bits (92), Expect = 3e-11 Identities = 185/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 14275 AGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACG- 14333 ||||||| |||||||| |||||| || | ||||||||| | || || || | |||| Sbjct 94565 AGGACACATACAGCCCAGACGAGTACTTCTGGGCCACCATCCAAAGGATC--CCTGACGT 94508 Query 14334 CCCGGGGGGA-TCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAG 14392 |||||| | | |||| || ||||||||| || |||||| || | | Sbjct 94507 CCCGGGCTCACTGTCCGTGAACCATAAGTACGACTTGTCTGACATGAATGCAGTCGCTCG 94448 Query 14393 GTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTG 14452 ||| ||||||||||| |||| ||||| || || || || |||| ||||| || || Sbjct 94447 GTTTGTCAAGTGGCAGTACTTTGAGGGTGACATTTCCAAGGGTGCCCCTTACCCACCCTG 94388 Query 14453 CGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAA 14512 | |||| |||| || | | | | ||| | || || | || ||| |||| ||| || Sbjct 94387 CAACGGGGTCCATGTGCGCTCAGTGTGCGTTTTTGGAGCTGGTGACTTGAACTGGATGTT 94328 Query 14513 GAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | || | ||| | || ||||| ||||| ||| Sbjct 94327 GCGCAAGCATCACTTTTTTGCCAATAAGTTTGAC 94294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658564988184320