Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7191 370 9e-98 seq3663 111 1e-19 seq1357 91.5 1e-13 >seq7191 Length=127218 Score = 370 bits (410), Expect = 9e-98 Identities = 459/624 (74%), Gaps = 7/624 (1%) Strand=Plus/Plus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 |||||||| ||| || || | || ||||| || ||||| || || | || || |||||| Sbjct 41204 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGGGTTTTCAGTGGCTCAATGTGATTCAGGTA 41262 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 | || || ||||||| | || ||||| || || || | || || |||| ||| || Sbjct 41263 AATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCTGTGATGTGTGC 41322 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 |||||||| ||||| |||| |||||||| ||||| |||||||| || || |||||||| Sbjct 41323 AATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCCATGTC 41382 Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30078 || |||| |||||| ||||| || || || |||| || ||| || ||||| || | Sbjct 41383 TCCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACCACATAGAACTGGCAGAG 41442 Query 30079 GGCGTGGCACGGAGGAAGAGCCATGA--GGCCCAAG-TCTTTGGGGTTCCAGGCGCACAC 30135 || ||||| ||||| || ||||| | || ||| ||||| ||||||||||| |||| Sbjct 41443 AGCATGGCAGGGAGGCAGCGCCATCAAAGG---AAGATCTTTTGGGTTCCAGGCACACAT 41499 Query 30136 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 30195 |||||| | ||||| || |||||| | ||||| ||| | | ||||||||||| || Sbjct 41500 GATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTC 41559 Query 30196 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 30255 || || || ||||| |||| |||| || |||| |||||||| ||||||||||| Sbjct 41560 TACTCCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAATGCCTCCA 41619 Query 30256 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30315 |||||| || || || || ||||||||||| |||| | | || ||| |||| Sbjct 41620 CTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTC 41679 Query 30316 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375 ||||||||||| ||| || ||||| |||||||| || || ||||| ||| || || || Sbjct 41680 CAAAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCCTT 41739 Query 30376 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30435 | |||||||| || ||| ||||||||||||||||||| || ||||||| || || Sbjct 41740 AGCATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTCCAGAATAC 41799 Query 30436 CCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||||| | || || ||||| Sbjct 41800 ACGTTTGGTTATAAGCAGAGGAAA 41823 >seq3663 Length=525456 Score = 111 bits (122), Expect = 1e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || |||| |||||||| ||||||||||||||||| || || || || ||||||| Sbjct 211971 TCATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGT 211912 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| |||| | | || ||| |||||| |||||||| ||| || ||||| | Sbjct 211911 CTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCAT 211852 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| || || ||||| ||| || || || | |||||||| || Sbjct 211851 CCCAGATTTTCACTCCCTTGGAAGACAGTTCCTTAGCATTTGTGGATCC 211803 >seq1357 Length=219996 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || |||||| | | ||||| |||||| || || Sbjct 173731 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 173790 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||||||||||| || |||||||| ||||||| ||||| || ||| Sbjct 173791 ATGGAGAACCAAGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 173838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406205632482444