Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq304 95.1 8e-15 seq3495 93.3 3e-14 >seq304 Length=872862 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| || ||||| | |||| ||||| ||| ||| || || ||||| || || || Sbjct 181520 GCCGCCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 181461 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 181460 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 181401 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | || || || || |||||| | ||| || | || ||||| | ||||| Sbjct 181400 AATGCCTTCTTTATCCTGGATCTTG-GCTTTCACATTCTCGATGGTGTCACTGGGCTCCA 181342 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||||| ||| || || || ||||| | || ||||| || |||||||| |||| Sbjct 181341 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 181288 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| || ||||| | |||| ||||| ||| ||| || || ||||| || || || Sbjct 181975 GCCGCC-CTCAGACGGAGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 181917 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 181916 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 181857 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | || || || || |||||| | ||| || | || ||||| | ||||| Sbjct 181856 AATGCCTTCTTTATCCTGGATCTTG-GCTTTCACATTCTCGATGGTGTCACTGGGCTCCA 181798 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| ||| || || || ||||| | || ||||| || ||||||||| Sbjct 181797 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 181748 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| || ||||| | |||| ||||| ||| || || || ||||| || || || Sbjct 181748 GCCGCCCCTCAGACGGAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 181689 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 181688 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 181629 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | || || || || |||||| | ||| || | || ||||| | ||||| Sbjct 181628 AATGCCTTCTTTATCCTGGATCTTG-GCTTTCACATTCTCGATGGTGTCACTGGGCTCCA 181570 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| ||| || || || ||||| | || ||||| || ||||||||| Sbjct 181569 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 181520 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | |||| ||||| ||| || || || ||||| || || || Sbjct 182203 GCCACCCCTCAGACGGAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 182144 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 182143 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 182084 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | || || || || |||||| | ||| || | || ||||| | ||||| Sbjct 182083 AATGCCTTCTTTATCCTGGATCTTG-GCTTTCACATTCTCGATGGTGTCACTGGGCTCCA 182025 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| ||| || || || ||||| | || ||||| || ||||||||| Sbjct 182024 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 181975 >seq3495 Length=1667739 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| || ||||| | |||| ||||| ||| ||| || || ||||| || || || Sbjct 879013 GCCGCCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 879072 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 879073 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 879132 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | || || || || |||||| | ||| || | || ||||| | ||||| Sbjct 879133 AATGCCTTCTTTATCCTGGATCTTG-GCTTTCACATTCTCGATGGTGTCACTGGGCTCCA 879191 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| ||| || || || ||||| | || ||||| || ||||||||| Sbjct 879192 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 879241 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| || ||||| | |||| ||||| ||| || || || || || || || || Sbjct 879468 GCCGCCCCTCAGACGGAGGACCAGGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGA 879527 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 879528 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 879587 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | || || || || |||||| | ||| || | || ||||| | ||||| Sbjct 879588 AATGCCTTCTTTATCCTGGATCTTG-GCTTTCACATTCTCGATGGTGTCACTGGGCTCCA 879646 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||||| ||| || || || ||||| | || ||||| || |||||||| |||| Sbjct 879647 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 879700 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| || ||||| | |||| ||||| ||| || || || ||||| || || || Sbjct 879241 GCCGCC-CTCAGACGGAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 879299 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 879300 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 879359 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCA 34657 | || || || || |||||| | ||| || | || ||||| | ||||| Sbjct 879360 AATGCCTTCTTTATCCTGGATCTTG-GCTTTCACATTCTCGATGGTGTCACTGGGCTCCA 879418 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| ||| || || || ||||| | || ||||| || ||||||||| Sbjct 879419 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 879468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314648446677581